Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_G10
         (761 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    25   0.77 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    25   0.77 
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    23   3.1  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   5.4  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   5.4  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    22   5.4  
DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    21   9.4  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    21   9.4  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 25.0 bits (52), Expect = 0.77
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 263 GFCLYFVMLSKCFLMFTEFNLHLLY 189
           GFCL F+M  +C  +   F ++  Y
Sbjct: 452 GFCLLFLMFFECIAISWAFGVNRFY 476


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 25.0 bits (52), Expect = 0.77
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 263 GFCLYFVMLSKCFLMFTEFNLHLLY 189
           GFCL F+M  +C  +   F ++  Y
Sbjct: 505 GFCLLFLMFFECIAISWAFGVNRFY 529


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +2

Query: 299 DFLPHHSFHSH 331
           DF+P+HS H H
Sbjct: 119 DFVPNHSSHEH 129


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 287 SCSIVLCFGFCLYFVML 237
           S S ++C+G  +YFV L
Sbjct: 213 SASYLVCYGIWVYFVPL 229


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 439 SWVQXDRIPKSRRLNLCFKF 498
           +W+   R   SR L+LC KF
Sbjct: 484 AWIGAGRDSDSRLLDLCTKF 503


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 287 SCSIVLCFGFCLYFVML 237
           S S ++C+G  +YFV L
Sbjct: 89  SASYLVCYGIWVYFVPL 105


>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 472 GTSECDPAGPRMES 431
           G + CDP G R++S
Sbjct: 57  GEAPCDPVGRRLKS 70


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 472 GTSECDPAGPRMES 431
           G + CDP G R++S
Sbjct: 57  GEAPCDPVGRRLKS 70


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,533
Number of Sequences: 438
Number of extensions: 3390
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)