BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fcaL-P02_F_G10 (761 letters) Database: bee 438 sequences; 146,343 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 25 0.77 AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 25 0.77 AB253416-1|BAE86927.1| 580|Apis mellifera alpha-glucosidase pro... 23 3.1 U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodops... 22 5.4 AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr... 22 5.4 AF091732-1|AAD02869.2| 154|Apis mellifera long-wavelength rhodo... 22 5.4 DQ855483-1|ABH88170.1| 117|Apis mellifera chemosensory protein ... 21 9.4 AJ973398-1|CAJ01445.1| 117|Apis mellifera hypothetical protein ... 21 9.4 >AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter transporter-1B protein. Length = 593 Score = 25.0 bits (52), Expect = 0.77 Identities = 9/25 (36%), Positives = 14/25 (56%) Frame = -1 Query: 263 GFCLYFVMLSKCFLMFTEFNLHLLY 189 GFCL F+M +C + F ++ Y Sbjct: 452 GFCLLFLMFFECIAISWAFGVNRFY 476 >AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter transporter-1B protein. Length = 646 Score = 25.0 bits (52), Expect = 0.77 Identities = 9/25 (36%), Positives = 14/25 (56%) Frame = -1 Query: 263 GFCLYFVMLSKCFLMFTEFNLHLLY 189 GFCL F+M +C + F ++ Y Sbjct: 505 GFCLLFLMFFECIAISWAFGVNRFY 529 >AB253416-1|BAE86927.1| 580|Apis mellifera alpha-glucosidase protein. Length = 580 Score = 23.0 bits (47), Expect = 3.1 Identities = 7/11 (63%), Positives = 9/11 (81%) Frame = +2 Query: 299 DFLPHHSFHSH 331 DF+P+HS H H Sbjct: 119 DFVPNHSSHEH 129 >U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodopsin protein. Length = 377 Score = 22.2 bits (45), Expect = 5.4 Identities = 8/17 (47%), Positives = 12/17 (70%) Frame = -1 Query: 287 SCSIVLCFGFCLYFVML 237 S S ++C+G +YFV L Sbjct: 213 SASYLVCYGIWVYFVPL 229 >AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein protein. Length = 1308 Score = 22.2 bits (45), Expect = 5.4 Identities = 9/20 (45%), Positives = 12/20 (60%) Frame = +1 Query: 439 SWVQXDRIPKSRRLNLCFKF 498 +W+ R SR L+LC KF Sbjct: 484 AWIGAGRDSDSRLLDLCTKF 503 >AF091732-1|AAD02869.2| 154|Apis mellifera long-wavelength rhodopsin protein. Length = 154 Score = 22.2 bits (45), Expect = 5.4 Identities = 8/17 (47%), Positives = 12/17 (70%) Frame = -1 Query: 287 SCSIVLCFGFCLYFVML 237 S S ++C+G +YFV L Sbjct: 89 SASYLVCYGIWVYFVPL 105 >DQ855483-1|ABH88170.1| 117|Apis mellifera chemosensory protein 2 protein. Length = 117 Score = 21.4 bits (43), Expect = 9.4 Identities = 7/14 (50%), Positives = 10/14 (71%) Frame = -2 Query: 472 GTSECDPAGPRMES 431 G + CDP G R++S Sbjct: 57 GEAPCDPVGRRLKS 70 >AJ973398-1|CAJ01445.1| 117|Apis mellifera hypothetical protein protein. Length = 117 Score = 21.4 bits (43), Expect = 9.4 Identities = 7/14 (50%), Positives = 10/14 (71%) Frame = -2 Query: 472 GTSECDPAGPRMES 431 G + CDP G R++S Sbjct: 57 GEAPCDPVGRRLKS 70 Database: bee Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 146,343 Number of sequences in database: 438 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 177,533 Number of Sequences: 438 Number of extensions: 3390 Number of successful extensions: 14 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 14 length of database: 146,343 effective HSP length: 57 effective length of database: 121,377 effective search space used: 23789892 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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