Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_G10
         (761 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g24360.1 68418.m02872 protein kinase family protein / Ire1 ho...    31   0.84 
At3g57000.1 68416.m06345 nucleolar essential protein-related con...    28   5.9  
At1g69420.2 68414.m07975 zinc finger (DHHC type) family protein ...    28   5.9  
At1g69420.1 68414.m07974 zinc finger (DHHC type) family protein ...    28   5.9  
At1g44050.1 68414.m05082 DC1 domain-containing protein contains ...    28   5.9  
At1g34420.1 68414.m04275 leucine-rich repeat family protein / pr...    28   5.9  
At1g18560.1 68414.m02315 hAT dimerisation domain-containing prot...    28   7.8  

>At5g24360.1 68418.m02872 protein kinase family protein / Ire1
           homolog-1 (IRE1-1) identical to Ire1 homolog-1
           [Arabidopsis thaliana] GI:15277137; cDNA Ire1 homolog-1
           GI:15277136;
          Length = 881

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 22/58 (37%), Positives = 30/58 (51%)
 Frame = -1

Query: 389 AMEELSPLLLKFPKASVASHVSGKSDEAGNQT*CSCSIVLCFGFCLYFVMLSKCFLMF 216
           A E LS  L +   + +   + G + +AG  +  S  IVL FGFC+   MLS C L F
Sbjct: 323 AEEVLSLPLPETVISQITDIIDGSTKQAGFASKFSGLIVLIFGFCV--TMLSVCGLFF 378


>At3g57000.1 68416.m06345 nucleolar essential protein-related
           contains weak similarity to Nucleolar essential protein
           1 (Essential for mitotic growth 1) (Swiss-Prot:Q06287)
           [Saccharomyces cerevisiae]
          Length = 298

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +1

Query: 151 ISQHHLPANTN-IKYRRCKLNSVNIKKHLESI 243
           I +HHLP N++ I +       VN++KHL ++
Sbjct: 212 IEEHHLPVNSHRIGFSHSSEKLVNMQKHLATV 243


>At1g69420.2 68414.m07975 zinc finger (DHHC type) family protein
           contains Pfam profile: PF01529: DHHC zinc finger domain
          Length = 596

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -1

Query: 446 TQDGIIVIKTTNGTRHKVTAMEELSPL-LLKFPKASVASHVSGKSDEAGNQ 297
           + DG  V  T NG+  K+ + E  S L LL  P A + S  SGK DE+  Q
Sbjct: 107 SHDGTCVEDTENGSNKKLESSERSSLLRLLCSPCALLCSCCSGK-DESSEQ 156


>At1g69420.1 68414.m07974 zinc finger (DHHC type) family protein
           contains Pfam profile: PF01529: DHHC zinc finger domain
          Length = 596

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -1

Query: 446 TQDGIIVIKTTNGTRHKVTAMEELSPL-LLKFPKASVASHVSGKSDEAGNQ 297
           + DG  V  T NG+  K+ + E  S L LL  P A + S  SGK DE+  Q
Sbjct: 107 SHDGTCVEDTENGSNKKLESSERSSLLRLLCSPCALLCSCCSGK-DESSEQ 156


>At1g44050.1 68414.m05082 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 530

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
 Frame = +2

Query: 296 SDFLPHHSFHS----HEMPLKLWETSTAKGSALP 385
           SD + HH FHS    HEM +   E+   +G ALP
Sbjct: 220 SDGIIHHPFHSHHLRHEMSITYDESKYCQGCALP 253


>At1g34420.1 68414.m04275 leucine-rich repeat family protein /
           protein kinase family protein contains leucine rich
           repeat (LRR) domains, Pfam:PF00560; contains protein
           kinase domain, Pfam:PF00069
          Length = 966

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -1

Query: 266 FGFCLYFVMLSKCFLMFTEFNLH 198
           F FCL+F  LS C + F+E +L+
Sbjct: 20  FMFCLFFSFLSCCHVCFSELSLN 42


>At1g18560.1 68414.m02315 hAT dimerisation domain-containing protein
           / BED zinc finger domain-containing protein /
           transposase-related weak similarity to Tam3-transposase
           [Antirrhinum majus] GI:16064; contains Pfam profiles
           PF02892: BED zinc finger, PF05699: hAT family
           dimerisation domain
          Length = 676

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 18/65 (27%), Positives = 28/65 (43%)
 Frame = -3

Query: 615 TFNHLSDILFLTLKPIMSQLAEILTIXKNLEENFTRKMGELETQIQSAGLRNAIXLDPGW 436
           T N + D    T+KPI+S++ E  T   N     +    +L T  Q    +  I     W
Sbjct: 295 TLNDIIDEGLATIKPIISKVRE-FTQELNASTELSDDFIQLTTAYQEGNWKLPIDASSRW 353

Query: 435 NHSYQ 421
           + +YQ
Sbjct: 354 SGNYQ 358


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,571,642
Number of Sequences: 28952
Number of extensions: 257120
Number of successful extensions: 638
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1702303248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)