Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_G08
         (773 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomy...    63   4e-11
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    26   6.9  
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    25   9.1  
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha...    25   9.1  

>SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 87

 Score = 63.3 bits (147), Expect = 4e-11
 Identities = 33/61 (54%), Positives = 39/61 (63%)
 Frame = +3

Query: 174 YAHFKQATVGAADPANSPGLLALKGKAKFDAWHKLAGTSKEDAQKAYIEIVEGLIASIGL 353
           YA FKQATVG  +    PGLL LKGK K++AW +L G SKEDA   YI  V+ L    G+
Sbjct: 28  YALFKQATVGDNN-TEKPGLLDLKGKFKWNAWEELKGKSKEDAASEYISFVDELKTKYGM 86

Query: 354 K 356
           K
Sbjct: 87  K 87


>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1462

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = +2

Query: 71   HICSICLSKSKFAQAAA 121
            H+C +CLS+S+  +AA+
Sbjct: 1266 HVCKLCLSRSRSLRAAS 1282


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = -3

Query: 510 KKNISNKNVK*RWRQKSLMRDDDAKNRAYLYSTLDN-ENYHVLASLKIKSFIL 355
           KKN+    V   W QK    D  A+N  YL S +      HV+ S  I S IL
Sbjct: 666 KKNVCT--VMNLWVQKYFFEDLKARNTLYLISEMRTFLRDHVVPSFHIGSVIL 716


>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
           Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 697

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 295 SFEVPASLCQASNLALPFKARRP 227
           S+ +PA + Q  N  +P KA +P
Sbjct: 30  SYSLPAPVAQKKNAQIPLKASKP 52


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,839,490
Number of Sequences: 5004
Number of extensions: 54365
Number of successful extensions: 127
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)