Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_G08
         (773 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    24   1.8  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    23   4.2  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    23   4.2  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   7.3  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -3

Query: 474 WRQKSLM-RDDDAKNRAYLYSTLDNENYH 391
           W QK L+ RD   KN   +Y  LDN + H
Sbjct: 255 WHQKELVRRDSRRKNYGGVYH-LDNHHVH 282


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +2

Query: 35  VRAGCLVVSXVPHICS 82
           V+ GC +   +P +CS
Sbjct: 228 VQTGCTITRVIPQVCS 243


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +2

Query: 35  VRAGCLVVSXVPHICS 82
           V+ GC +   +P +CS
Sbjct: 228 VQTGCTITRVIPQVCS 243


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 262 TLGTNWPALRRRMPRKPTSRSSKVS*LPSASKNKRLNFQ 378
           +L   + ALR+ +P  P+ + SK+  L  A++     FQ
Sbjct: 268 SLNEAFAALRKIIPTLPSDKLSKIQTLKLATRYIDFLFQ 306


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,303
Number of Sequences: 438
Number of extensions: 3591
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)