Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_G08
         (773 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g31812.1 68414.m03905 acyl-CoA binding protein / ACBP identic...    46   2e-05
At4g27780.1 68417.m03990 acyl-CoA binding protein 2 (ACBP2) iden...    40   0.001
At5g53470.1 68418.m06645 acyl-CoA binding protein, putative / AC...    38   0.006
At3g18900.1 68416.m02400 expressed protein contains Pfam profile...    29   3.4  
At1g31730.1 68414.m03893 epsilon-adaptin, putative similar to SP...    29   3.4  
At3g13030.1 68416.m01623 hAT dimerisation domain-containing prot...    28   6.0  
At4g19800.1 68417.m02904 glycosyl hydrolase family 18 protein si...    28   7.9  

>At1g31812.1 68414.m03905 acyl-CoA binding protein / ACBP identical
           to acyl-CoA-binding protein (ACBP) [Arabidopsis
           thaliana] SWISS-PROT:P57752
          Length = 92

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 22/55 (40%), Positives = 33/55 (60%)
 Frame = +3

Query: 174 YAHFKQATVGAADPANSPGLLALKGKAKFDAWHKLAGTSKEDAQKAYIEIVEGLI 338
           Y  +KQA  G  D +  PG+ ++K +AK+DAW  + G S E+A   YI  V+ L+
Sbjct: 30  YGLYKQAKFGPVDTSR-PGMFSMKERAKWDAWKAVEGKSSEEAMNDYITKVKQLL 83


>At4g27780.1 68417.m03990 acyl-CoA binding protein 2 (ACBP2)
           identical to acyl-CoA binding protein 2 [Arabidopsis
           thaliana] gi|12039034|gb|AAG46057
          Length = 354

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 22/54 (40%), Positives = 28/54 (51%)
 Frame = +3

Query: 174 YAHFKQATVGAADPANSPGLLALKGKAKFDAWHKLAGTSKEDAQKAYIEIVEGL 335
           Y  +K AT G    A  P  L +  +AK+ AW KL     E+A + YIEIV  L
Sbjct: 136 YGLYKIATEGPCT-APQPSALKMTARAKWQAWQKLGAMPPEEAMEKYIEIVTQL 188


>At5g53470.1 68418.m06645 acyl-CoA binding protein, putative / ACBP,
           putative similar to acyl-CoA binding protein 2
           [Arabidopsis thaliana] gi|12039034|gb|AAG46057
          Length = 338

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 20/54 (37%), Positives = 28/54 (51%)
 Frame = +3

Query: 174 YAHFKQATVGAADPANSPGLLALKGKAKFDAWHKLAGTSKEDAQKAYIEIVEGL 335
           Y  +K AT G    A  P  L +  +AK+ AW KL     E+A + YI++V  L
Sbjct: 126 YGLYKIATEGPCT-APQPSALKMTARAKWQAWQKLGAMPPEEAMEKYIDLVTQL 178


>At3g18900.1 68416.m02400 expressed protein contains Pfam profile
           PF04784: Protein of unknown function, DUF547; contains
           TIGRFAM TIGR01640: F-box protein interaction domain
          Length = 815

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -2

Query: 670 TERPSTCILLKHDFEKDASYFIALQYYALAPWKYRS 563
           TE P T  LLK DF  + S  + L Y++L   ++ +
Sbjct: 649 TETPRTISLLKFDFSIEKSVLVPLPYHSLQSRRFEA 684


>At1g31730.1 68414.m03893 epsilon-adaptin, putative similar to
           SP|Q9UPM8 Adapter-related protein complex 4 epsilon 1
           subunit (Epsilon subunit of AP-4) (AP-4 adapter complex
           epsilon subunit) {Homo sapiens}; contains Pfam profile:
           PF01602 Adaptin N terminal region
          Length = 938

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -2

Query: 691 VNQNKYKTERPSTCILLKHDFEKDASYFIAL 599
           +N N YKTE  S C+ L   F     +FI +
Sbjct: 409 INDNHYKTEIASRCVELAEQFAPSNQWFIQI 439


>At3g13030.1 68416.m01623 hAT dimerisation domain-containing protein
           contains Pfam profile: PF04937 domain of unknown
           function (DUF659), weak hit to PF05699 hAT family
           dimerisation domain
          Length = 544

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/31 (35%), Positives = 22/31 (70%)
 Frame = +2

Query: 626 FEIMF*KYTRTRSFRFVFILVNDLYLYLSGH 718
           FE+M  K ++ RSF  +F  VN+++L+++ +
Sbjct: 217 FELMLVKISKIRSFGDIFDKVNNIWLFINNN 247


>At4g19800.1 68417.m02904 glycosyl hydrolase family 18 protein
           similar to chitinase, class V GI:899342 from [Nicotiana
           tabacum]
          Length = 398

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = -3

Query: 237 LEDQGYWLDRQLQLWPV*NGHTS*GVGQQLEELXGD-CTLAAAWANFDLERQI 82
           + D G    RQLQ W V NG T   V   +  + GD C     W  +D E+ I
Sbjct: 260 ISDDGEISYRQLQTWIVDNGATK--VHDDM--MVGDYCYAGTTWIGYDSEKSI 308


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,703,712
Number of Sequences: 28952
Number of extensions: 277322
Number of successful extensions: 628
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1726528800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)