Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_G03
         (860 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.05c |||translation initiation factor eIF5 |Schizosacchar...    26   7.9  
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    26   7.9  
SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces p...    26   7.9  

>SPAC2F7.05c |||translation initiation factor eIF5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 395

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 16/51 (31%), Positives = 21/51 (41%)
 Frame = -2

Query: 814 IESKRKRVNFHLKFF*LTIXIFCFYVMHYMGVGEKHANILFFVKIVKKYCT 662
           I  K K  N H K   + + + C     Y+G  EKH        + KK CT
Sbjct: 254 IYKKMKEENIHHKSKAIVVLVQCIITSPYVGEFEKHG------ALFKKLCT 298


>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
           Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 12/49 (24%), Positives = 22/49 (44%)
 Frame = -2

Query: 829 YHLIIIESKRKRVNFHLKFF*LTIXIFCFYVMHYMGVGEKHANILFFVK 683
           Y +++   +R  + FH  ++ L +   C YV+ Y        N   +VK
Sbjct: 168 YAVVVTSFERDLIPFHELYYKLALEGKCNYVIRYSPPSSSKLNSKLYVK 216


>SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 506

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = +1

Query: 409 HIYINYDQINKHKKTTCLFNLNFVSC*LNYKLYSNVYFKNFNKKNLPP 552
           +I++NY QIN+ ++          +C ++ KL   + + N  K++L P
Sbjct: 44  YIFVNYSQINRVRRELRTIGTPLETC-VSCKLIVKIDWLNEPKESLTP 90


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,946,958
Number of Sequences: 5004
Number of extensions: 57364
Number of successful extensions: 90
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)