Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_G03
         (860 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_05_0035 - 18509505-18509615,18509840-18509950,18510318-185103...    29   4.8  
04_04_0694 - 27311910-27312056,27314277-27314420,27315085-273151...    29   6.3  

>11_05_0035 -
           18509505-18509615,18509840-18509950,18510318-18510377,
           18510459-18510576,18510711-18510811,18510891-18510962,
           18511069-18511156,18511423-18511557,18511655-18511767,
           18511980-18512051,18512154-18512258,18512371-18512484,
           18512587-18512681,18513539-18513686
          Length = 480

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +2

Query: 182 LNFDTYYFQKLLFNYTCFKILHTIKYEIGYSIRYYLRAPL 301
           LNF TY FQ  +   + FK+L   +Y++  S +Y L  P+
Sbjct: 111 LNFLTYMFQ--IMEKSNFKLLSDEEYDVAQSGQYLLNLPI 148


>04_04_0694 -
           27311910-27312056,27314277-27314420,27315085-27315108,
           27315570-27315713,27316372-27316423,27316534-27316599,
           27316724-27316955,27316970-27317081
          Length = 306

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -1

Query: 803 KKTGKFSLEVFLINDXDILFLC-DALYGSWRETC 705
           K   K +L +  + D D L  C DA +G W ++C
Sbjct: 116 KNAAKRTLRLVGLTDPDYLLQCEDAAFGDWEDSC 149


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,973,000
Number of Sequences: 37544
Number of extensions: 264292
Number of successful extensions: 413
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 413
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)