Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_G03
         (860 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132952-16|CAC70119.1|  107|Caenorhabditis elegans Hypothetical...    31   1.1  
Z82070-2|CAB04914.1|  199|Caenorhabditis elegans Hypothetical pr...    30   1.8  

>AL132952-16|CAC70119.1|  107|Caenorhabditis elegans Hypothetical
           protein Y51H4A.26 protein.
          Length = 107

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 66  KCLRTSLPLKCKYILKYSQCVPSQSS 143
           +C++ + P +C Y  KY +CVP   S
Sbjct: 81  RCIKKNCPKRCPYGCKYGECVPRPDS 106


>Z82070-2|CAB04914.1|  199|Caenorhabditis elegans Hypothetical
           protein W04E12.2 protein.
          Length = 199

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -2

Query: 820 IIIESKRKRVNFHLKFF*LTIXIFCFYVMHYMGVGE-KHANILFFVKIV 677
           I +  K +R + H+K   L + IF FY+  ++ V +  H   LF + IV
Sbjct: 128 IELPEKTRRSHEHIKLHRLLVLIFVFYIGSFLTVRDGNHVTFLFGILIV 176


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,982,878
Number of Sequences: 27780
Number of extensions: 312860
Number of successful extensions: 683
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)