Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_G03
         (860 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g43490.1 68415.m05404 RabGAP/TBC domain-containing protein si...    28   7.0  

>At2g43490.1 68415.m05404 RabGAP/TBC domain-containing protein
           similar to GTPase activating protein [Yarrowia
           lipolytica] GI:2370595; contains Pfam profile PF00566:
           TBC domain
          Length = 756

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 15/45 (33%), Positives = 29/45 (64%), Gaps = 3/45 (6%)
 Frame = +3

Query: 66  KCLRTSLPLKCKYILKYSQCVPSQS---SLHIFYIYNNHVTHLIS 191
           +C+RT++ L+ KY+ K SQ + ++S   S ++  ++  H TH+ S
Sbjct: 684 RCIRTAMKLRRKYMYK-SQVIKTKSHTQSQNLNQVHIQHQTHMES 727


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,111,363
Number of Sequences: 28952
Number of extensions: 252761
Number of successful extensions: 519
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2009406400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)