Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_G01
(530 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC285.12 |lsm7||U6 snRNP-associated protein Lsm7|Schizosacchar... 119 3e-28
SPBC4B4.05 |smg1||Sm snRNP core protein Smg1|Schizosaccharomyces... 51 1e-07
SPCC1840.10 |lsm8||U6 snRNP-associated protein Lsm8 |Schizosacch... 38 0.001
SPBC9B6.05c |lsm3||U6 snRNP-associated protein Lsm3|Schizosaccha... 38 0.001
SPAC2F3.17c |lsm6||U6 snRNP-associated protein Lsm6|Schizosaccha... 31 0.081
SPBC20F10.09 |lsm5||U6 snRNP-associated protein Lsm5|Schizosacch... 30 0.19
SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 28 1.00
SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9 |Sch... 27 2.3
SPAC23A1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 3.0
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc... 26 4.0
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 26 4.0
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc... 26 4.0
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa... 25 5.3
SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces po... 25 5.3
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 5.3
SPBC11G11.06c |sme1||Sm snRNP core protein Sme1|Schizosaccharomy... 25 5.3
SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces... 25 7.0
SPBC3E7.14 |smf1|SPBC4F6.01|Sm snRNP core protein Smf1|Schizosac... 25 7.0
>SPCC285.12 |lsm7||U6 snRNP-associated protein
Lsm7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 113
Score = 119 bits (286), Expect = 3e-28
Identities = 60/110 (54%), Positives = 76/110 (69%)
Frame = +2
Query: 137 EKSKGSQVTGDNKEKRRKESILDLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNT 316
+K G + E+ RKESILDLS+Y ++ I+ F GGR+ GILKG+D L+NLVLD+
Sbjct: 5 QKRPGPGNSSQPTERPRKESILDLSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDV 64
Query: 317 TEFLRDPDDPYKLLDDTRALGLVVCRGTSVVLICPMDGMEAIPNPFINQE 466
E LR+P+D KL R LGLVV RGT++VLI PMDG E IPNPF+ E
Sbjct: 65 EEQLRNPEDG-KLTGAIRKLGLVVVRGTTLVLIAPMDGSEEIPNPFVQAE 113
>SPBC4B4.05 |smg1||Sm snRNP core protein Smg1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 77
Score = 50.8 bits (116), Expect = 1e-07
Identities = 28/77 (36%), Positives = 45/77 (58%)
Frame = +2
Query: 203 DLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRDPDDPYKLLDDTRALGL 382
DL KYL++ + V+ G R+ G+L+GYD LN+VL+++ E K+ + +G
Sbjct: 8 DLKKYLDRQVFVQLNGSRKVYGVLRGYDIFLNIVLEDSIE--------EKVDGEKVKIGS 59
Query: 383 VVCRGTSVVLICPMDGM 433
V RG SV++I +D M
Sbjct: 60 VAIRGNSVIMIETLDKM 76
>SPCC1840.10 |lsm8||U6 snRNP-associated protein Lsm8
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 94
Score = 37.9 bits (84), Expect = 0.001
Identities = 21/72 (29%), Positives = 39/72 (54%)
Frame = +2
Query: 200 LDLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRDPDDPYKLLDDTRALG 379
+ L+ ++E+ ++V GR G LKG+D NL+L ++ E + D +T LG
Sbjct: 1 MSLADFMEQRVQVITNDGRVVLGSLKGFDHTTNLILSDSFERIISMDQDM----ETIPLG 56
Query: 380 LVVCRGTSVVLI 415
+ + RG +V ++
Sbjct: 57 VYLLRGENVAMV 68
>SPBC9B6.05c |lsm3||U6 snRNP-associated protein
Lsm3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 93
Score = 37.9 bits (84), Expect = 0.001
Identities = 30/80 (37%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Frame = +2
Query: 200 LDLSKY-LEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTE----FLRDPDDPYKLLDD 364
LDL + L++ + VK G RE G L YD LN+VL + E F + D K L
Sbjct: 11 LDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKT 70
Query: 365 TRA-LGLVVCRGTSVVLICP 421
R ++ RG SV+LI P
Sbjct: 71 IRKHYEMLFVRGDSVILIAP 90
>SPAC2F3.17c |lsm6||U6 snRNP-associated protein
Lsm6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 75
Score = 31.5 bits (68), Expect = 0.081
Identities = 19/74 (25%), Positives = 34/74 (45%)
Frame = +2
Query: 206 LSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRDPDDPYKLLDDTRALGLV 385
L+K + K + ++ + G + GIL D +NL L+ T E++ T G
Sbjct: 9 LNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYVNG--------KKTNVYGDA 60
Query: 386 VCRGTSVVLICPMD 427
RG +V+ + +D
Sbjct: 61 FIRGNNVLYVSALD 74
>SPBC20F10.09 |lsm5||U6 snRNP-associated protein
Lsm5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 80
Score = 30.3 bits (65), Expect = 0.19
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +2
Query: 206 LSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEF 325
+ K + ++ V RE AG L G+D +N+VL + TE+
Sbjct: 11 IDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEY 50
>SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 230
Score = 27.9 bits (59), Expect = 1.00
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = -3
Query: 201 NIDSFLLFSLLSPVTWLPFDFSPPSLDAMFVLQLSNFKSLPTLF 70
NI SFLL S+ + +++L D + P A N+ +L T+F
Sbjct: 2 NIRSFLLISIFTAISYLVVDGATPRTFAPSASVSINYGTLSTVF 45
>SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 577
Score = 26.6 bits (56), Expect = 2.3
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -1
Query: 107 YNYQISNHYLLYSYLIKVLNYLQFILLFSFFQV 9
YNY HYLLY Y ++ Y + S+F +
Sbjct: 41 YNYWEPLHYLLYGYGLQTWEYSPEYAIRSWFYI 73
>SPAC23A1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 101
Score = 26.2 bits (55), Expect = 3.0
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -1
Query: 125 WMPCLYYNYQISNHYLLYSYL-IKVLNYLQFILLF 24
W+ YY YQ++ L++Y V N + FI++F
Sbjct: 24 WLRLQYYRYQVTAGTYLFTYKEAFVFNTVVFIIVF 58
>SPAC25A8.01c ||snf2SR|fun thirty related protein
Fft3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 922
Score = 25.8 bits (54), Expect = 4.0
Identities = 18/51 (35%), Positives = 30/51 (58%)
Frame = -3
Query: 249 PANFTRMLFSKYLLRSNIDSFLLFSLLSPVTWLPFDFSPPSLDAMFVLQLS 97
PA+F R+L + L++N+ L SLL+ + FD+ SLD +F ++ S
Sbjct: 538 PADF-RVLLTGTPLQNNLKE--LISLLAFILPHVFDYGLKSLDVIFTMKKS 585
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 25.8 bits (54), Expect = 4.0
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -3
Query: 210 LRSNIDSFLL-FSLLSPVTWLPFDFSPPSLDAMFVLQLSN 94
L +N D +L FS+L+ + +LP PPS D Q+SN
Sbjct: 927 LCANGDFYLAKFSILTLIEFLPSFAPPPSNDKQSTPQVSN 966
>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 581
Score = 25.8 bits (54), Expect = 4.0
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -3
Query: 204 SNIDSFLLFSLLSPVTW 154
S +DSFL F L P+TW
Sbjct: 272 SGLDSFLNFPLYWPITW 288
>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 759
Score = 25.4 bits (53), Expect = 5.3
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -3
Query: 147 FDFSPPSLDAMFVLQLSNFK 88
FD +P S D+ FV QLS F+
Sbjct: 17 FDLTPNSFDSDFVEQLSKFE 36
>SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 25.4 bits (53), Expect = 5.3
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 5/44 (11%)
Frame = -1
Query: 125 WMPCLYYNYQISNHYLLY---SYLIK-VLNYLQFIL-LFSFFQV 9
W+ + Y+Y + +YLLY +YL K V +Y+ + +F +F+V
Sbjct: 352 WLKHIRYSYTLRRNYLLYAMDTYLPKSVCSYIPPVAGMFIWFEV 395
>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 780
Score = 25.4 bits (53), Expect = 5.3
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +2
Query: 83 SDLKFDNCNTNMASKEGGEKSKGSQVTGDNKEKRRK 190
S L DN TN+++K ++ G D+ +K++K
Sbjct: 361 SSLSMDNDPTNVSTKNRNNQTVGEHPYVDDNKKKKK 396
>SPBC11G11.06c |sme1||Sm snRNP core protein Sme1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 84
Score = 25.4 bits (53), Expect = 5.3
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = +2
Query: 266 GILKGYDPLLNLVLDNTTEFLRDPDDPYKLLDDTRALGLVVCRGTSVVLI 415
G ++G+D +N+VLD+ + ++ R LG ++ +G ++ LI
Sbjct: 40 GQIRGFDEFMNIVLDDAVQ--------VDAKNNKRELGRILLKGDNITLI 81
>SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 408
Score = 25.0 bits (52), Expect = 7.0
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +2
Query: 167 DNKEKRRKESILDLSKYLEKSIRVKFAGGREAAGILKGYDPL 292
+N K+ + + +++ +E I + + E G+LKGYD L
Sbjct: 353 NNHRKKISQVLRKINRDIEL-ININYGTDSEWRGVLKGYDKL 393
>SPBC3E7.14 |smf1|SPBC4F6.01|Sm snRNP core protein
Smf1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 78
Score = 25.0 bits (52), Expect = 7.0
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +2
Query: 206 LSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFL 328
L + K + V+ G+E G L+ D +NL L N E +
Sbjct: 12 LQGLIGKPVLVRLKWGQEYKGTLQSVDSYMNLQLLNAEELV 52
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,937,427
Number of Sequences: 5004
Number of extensions: 37695
Number of successful extensions: 131
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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