Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_G01
(530 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0523 + 4556309-4556311,4556434-4556515,4557528-4557548,455... 111 3e-25
03_04_0043 + 16747103-16747137,16747237-16747259,16748735-167488... 54 5e-08
07_03_1222 - 24983294-24983356,24983695-24983858,24985209-249852... 44 8e-05
01_06_1461 - 37520885-37520965,37521366-37521461,37522160-37522297 37 0.012
07_01_0479 + 3606663-3607448 35 0.047
05_04_0169 - 18694418-18694453,18694516-18694627,18696095-186962... 30 1.0
05_04_0033 - 17369134-17369321,17369522-17370355,17370429-17373042 30 1.0
07_03_1578 + 27872636-27872840,27872928-27873175,27873215-278732... 29 1.8
05_07_0342 + 29402867-29402906,29403012-29403052,29403146-294032... 29 2.3
08_02_0299 + 15487202-15487227,15487369-15487491,15488277-154883... 29 3.1
02_05_0577 - 30100084-30100251,30100474-30100548,30100631-301007... 29 3.1
09_05_0016 + 20089545-20089748,20090072-20090263,20090644-200908... 28 4.1
02_02_0405 + 9885202-9885415,9885515-9885861,9885941-9886516,988... 28 4.1
03_06_0641 - 35232858-35232892,35233066-35233290,35233785-352339... 28 5.4
01_05_0122 + 18366119-18367014,18367042-18367397,18367471-18368165 28 5.4
11_01_0710 - 5830475-5830595,5831498-5834124 27 7.1
08_01_0433 + 3794440-3794948,3795696-3796707 27 7.1
04_03_0610 - 17972032-17972835 27 7.1
04_04_1252 + 32093522-32093642,32093912-32094078,32094832-320950... 27 9.4
02_02_0561 - 11515641-11516145,11516290-11517005,11517204-11517824 27 9.4
>08_01_0523 +
4556309-4556311,4556434-4556515,4557528-4557548,
4557824-4557895,4558259-4558311,4558721-4558807
Length = 105
Score = 111 bits (268), Expect = 3e-25
Identities = 53/97 (54%), Positives = 69/97 (71%), Gaps = 7/97 (7%)
Frame = +2
Query: 185 RKESILDLSKYLEKSIRVKFAGGREAA-------GILKGYDPLLNLVLDNTTEFLRDPDD 343
RKE++LDL+K+++K ++VK GGR+ + G LKGYD LLNLVLD EF R+ DD
Sbjct: 4 RKETVLDLAKFVDKGVQVKLTGGRQVSFYGQSVTGTLKGYDQLLNLVLDEAVEFEREQDD 63
Query: 344 PYKLLDDTRALGLVVCRGTSVVLICPMDGMEAIPNPF 454
P KL TR LGL+VCRGT+V+L+ P DG + I NPF
Sbjct: 64 PLKLSGKTRQLGLIVCRGTAVMLVSPTDGTDEIANPF 100
>03_04_0043 +
16747103-16747137,16747237-16747259,16748735-16748856,
16748980-16749042
Length = 80
Score = 54.4 bits (125), Expect = 5e-08
Identities = 30/81 (37%), Positives = 46/81 (56%)
Frame = +2
Query: 203 DLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRDPDDPYKLLDDTRALGL 382
DL KY++K +++K R G L+G+D +NLV+DNT E +D +G+
Sbjct: 9 DLKKYMDKKLQIKLNANRVIVGTLRGFDQFMNLVVDNTVEVNG---------NDKTDIGM 59
Query: 383 VVCRGTSVVLICPMDGMEAIP 445
VV RG SVV+I + +E +P
Sbjct: 60 VVVRGNSVVMI---EALEPVP 77
>07_03_1222 -
24983294-24983356,24983695-24983858,24985209-24985231,
24985340-24985374
Length = 94
Score = 44.0 bits (99), Expect = 8e-05
Identities = 28/90 (31%), Positives = 47/90 (52%)
Frame = +2
Query: 182 RRKESILDLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRDPDDPYKLLD 361
++ ++++ S L + VK R G L+G+D +NLV+DNT E +
Sbjct: 16 KKLQTLMVYSFTLFSILPVKLNANRVVIGTLRGFDQFMNLVVDNTVEVNG---------N 66
Query: 362 DTRALGLVVCRGTSVVLICPMDGMEAIPNP 451
+ +G+VV RG SVV+I + +E +P P
Sbjct: 67 EKNDIGMVVIRGNSVVMI---EALEPVPKP 93
>01_06_1461 - 37520885-37520965,37521366-37521461,37522160-37522297
Length = 104
Score = 36.7 bits (81), Expect = 0.012
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Frame = +2
Query: 200 LDLSKY-LEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRD---PDDPYKLLDDT 367
LDL + L++ I VK RE G L YD LN++L + E + D+ Y+ + T
Sbjct: 20 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRT 79
Query: 368 --RALGLVVCRGTSVVLICP 421
R + + RG V+L+ P
Sbjct: 80 TKRTIPFLFVRGDGVILVSP 99
>07_01_0479 + 3606663-3607448
Length = 261
Score = 34.7 bits (76), Expect = 0.047
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Frame = +2
Query: 212 KYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRDPDDPYKLL----DDTRALG 379
+++ +RV GR+ G +D +NLVL + EF + P ++ R LG
Sbjct: 11 QFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPSKSSKTTGEREERRTLG 70
Query: 380 LVVCRGTSVV 409
L++ RG VV
Sbjct: 71 LLLLRGEEVV 80
>05_04_0169 -
18694418-18694453,18694516-18694627,18696095-18696243,
18696980-18697033,18697110-18697222,18697323-18697374
Length = 171
Score = 30.3 bits (65), Expect = 1.0
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +2
Query: 206 LSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEF 325
+ + + I V G +E G L G+D +N+VL++ TE+
Sbjct: 84 IDRCIGSKIWVIMKGDKELVGTLCGFDVYVNMVLEDVTEY 123
>05_04_0033 - 17369134-17369321,17369522-17370355,17370429-17373042
Length = 1211
Score = 30.3 bits (65), Expect = 1.0
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = -3
Query: 510 LPYLKIYSYQNYSYPSWLIKGFGIASIPSIGHIKTTDVPRQTTRPK 373
L +L I Y++ +YPSWL++G + ++ S + + R + K
Sbjct: 776 LEHLSIRGYKSTTYPSWLLEGSQLENLESFALYNCSALERLPSNTK 821
>07_03_1578 +
27872636-27872840,27872928-27873175,27873215-27873295,
27873665-27873822,27874391-27874450,27874655-27874873,
27875100-27875201,27875352-27875500,27875582-27875734,
27875839-27876194
Length = 576
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +2
Query: 101 NCNTNMASKEGGEKSKGSQVTGDNKEKRRKESILDLSKYLEKSIRV 238
N TN S++GGEK K NK+K+ K L+K +V
Sbjct: 447 NDMTNAVSEDGGEKEKNDTSAKKNKKKKSKAEADGEEMDLDKPAKV 492
>05_07_0342 +
29402867-29402906,29403012-29403052,29403146-29403220,
29403523-29403648,29404195-29404247,29404385-29404475
Length = 141
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 206 LSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTE 322
L +++ I V GR G L+G+D N++LD + E
Sbjct: 8 LESLVDQIISVITNDGRNIVGTLRGFDQATNIILDESHE 46
>08_02_0299 +
15487202-15487227,15487369-15487491,15488277-15488397,
15488572-15488700,15489954-15490063,15490139-15490322,
15491155-15491346,15492190-15492411,15492501-15492687,
15494009-15494103
Length = 462
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/46 (23%), Positives = 25/46 (54%)
Frame = +2
Query: 98 DNCNTNMASKEGGEKSKGSQVTGDNKEKRRKESILDLSKYLEKSIR 235
+NCN + ++ S+ DN KRR+E + D+ + +++ ++
Sbjct: 190 ENCNGELVAESDKLASEEMGDGDDNARKRRREKLKDMQQRIDEQLK 235
>02_05_0577 -
30100084-30100251,30100474-30100548,30100631-30100755,
30101538-30101609,30102016-30102108,30102333-30102419,
30103049-30103135,30103448-30103522,30104142-30104238
Length = 292
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/41 (34%), Positives = 27/41 (65%)
Frame = +2
Query: 128 EGGEKSKGSQVTGDNKEKRRKESILDLSKYLEKSIRVKFAG 250
+G +++K SQVTG+ E+ R++ ++ S YL+ + K +G
Sbjct: 146 QGADRTK-SQVTGNRTEELRRKKTVEGSHYLQDFEKCKKSG 185
>09_05_0016 +
20089545-20089748,20090072-20090263,20090644-20090814,
20090915-20091096,20091189-20091435,20091776-20091908,
20092070-20092599,20092940-20093170
Length = 629
Score = 28.3 bits (60), Expect = 4.1
Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Frame = +2
Query: 116 MASKEGGEKSKGSQVTGDN-KEKRRKESILDLSKYLEKSIR 235
++ KE KG ++GD+ K+ RK S +DLSK L KS+R
Sbjct: 585 LSIKEFYRSKKG--LSGDSGKDGSRKSSDVDLSKNLPKSVR 623
>02_02_0405 +
9885202-9885415,9885515-9885861,9885941-9886516,
9886599-9887003
Length = 513
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +2
Query: 77 VGSDLKFDNCNTNMASKEGGEKSKGSQVTGDNKEKRRKE 193
V S L N TN+A+ GE K + D KE+ +KE
Sbjct: 96 VSSALALSNAITNLAASVFGEHRKLEPMAPDTKERWKKE 134
>03_06_0641 -
35232858-35232892,35233066-35233290,35233785-35233929,
35234295-35234406,35234477-35234535,35234981-35235022,
35235372-35235434,35235636-35235697,35236298-35236451,
35236572-35236651,35237646-35237709,35237791-35237959,
35238002-35238114,35238361-35238507
Length = 489
Score = 27.9 bits (59), Expect = 5.4
Identities = 20/55 (36%), Positives = 25/55 (45%)
Frame = +2
Query: 185 RKESILDLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRDPDDPY 349
R+E D +KY +R+KF +A LKG D L L D FL D Y
Sbjct: 267 RREPTSDPTKYTAADVRIKFMLIMQAIVALKGTDQKLRL-CDICGAFLSVYDKKY 320
>01_05_0122 + 18366119-18367014,18367042-18367397,18367471-18368165
Length = 648
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 149 GSQVTGDNKEKRRKESILDLSKYLEKSIRVKFAGG 253
G V GD+ +K LDL +L +I ++ AGG
Sbjct: 403 GRHVAGDDDDKPTMLGPLDLPSFLSDTISIETAGG 437
>11_01_0710 - 5830475-5830595,5831498-5834124
Length = 915
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = -3
Query: 504 YLKIYSYQNYSYPSWLIKGFGIA-SIPSIGHIKTTDVPRQTTRP 376
Y ++ Y + S+P+WL+ GIA +P++ IK D+ + + P
Sbjct: 513 YFELRGYHSTSFPTWLM---GIAHCLPNLVKIKIVDLSKCSILP 553
>08_01_0433 + 3794440-3794948,3795696-3796707
Length = 506
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = -3
Query: 279 PLRIPAASRPPANFTRMLFSKYLLRSNID 193
P RI S+PP + RM+F+ Y LR NID
Sbjct: 152 PRRIKPGSKPPKDLKRMVFN-YTLR-NID 178
>04_03_0610 - 17972032-17972835
Length = 267
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = +2
Query: 293 LNLVLDNTTEFLRDPDDPYKLLDDTRALGLVVCRGTSVVLICPMDGMEA 439
+N +D+ FL D PY+L D ++ CR + + I +E+
Sbjct: 58 INRTMDSINWFLSFRDTPYRLSDTGNKFTVIGCRTLAYITITKPQQLES 106
>04_04_1252 +
32093522-32093642,32093912-32094078,32094832-32095050,
32095143-32095302,32095696-32095825,32095998-32096151
Length = 316
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +2
Query: 350 KLLDDTRALGLVVCRGTSVVLICPMDGMEAIPNPFINQ 463
K+L + A L G S+V +CP+ + A P P N+
Sbjct: 175 KVLSEKEASKLAEENGISLVAVCPVATVGASPAPVANE 212
>02_02_0561 - 11515641-11516145,11516290-11517005,11517204-11517824
Length = 613
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 101 NCNTNMASKEGGEKSKGSQVTGDNKEKRRKESILDLSKY 217
N + K GG S G+ G ++++R +E + LS+Y
Sbjct: 430 NALASPLKKSGGVLSDGAAGGGGDQQRRHREIAMSLSRY 468
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,912,165
Number of Sequences: 37544
Number of extensions: 226228
Number of successful extensions: 728
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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