Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_G01
(530 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69385-6|CAA93428.1| 104|Caenorhabditis elegans Hypothetical pr... 129 1e-30
AF303264-1|AAG50222.1| 77|Caenorhabditis elegans SM protein G ... 56 1e-08
AC024201-5|AAF36015.1| 77|Caenorhabditis elegans Small nuclear... 56 1e-08
AC084197-12|AAL00875.1| 98|Caenorhabditis elegans Lsm sm-like ... 45 3e-05
Z69302-4|CAA93263.1| 125|Caenorhabditis elegans Hypothetical pr... 30 0.90
Z81071-3|CAB03013.1| 91|Caenorhabditis elegans Hypothetical pr... 29 2.1
U88169-8|AAB42237.1| 866|Caenorhabditis elegans Holocentric chr... 28 3.6
AF321299-1|AAK07638.1| 866|Caenorhabditis elegans CENP-C-like p... 28 3.6
U41264-3|AAA82423.1| 574|Caenorhabditis elegans Hypothetical pr... 28 4.8
Z70754-2|CAC42308.1| 764|Caenorhabditis elegans Hypothetical pr... 27 6.3
Z70754-1|CAA94771.2| 966|Caenorhabditis elegans Hypothetical pr... 27 6.3
AF164113-1|AAD45535.1| 810|Caenorhabditis elegans zinc finger p... 27 6.3
Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical pr... 27 8.4
>Z69385-6|CAA93428.1| 104|Caenorhabditis elegans Hypothetical
protein ZK593.7 protein.
Length = 104
Score = 129 bits (312), Expect = 1e-30
Identities = 55/96 (57%), Positives = 78/96 (81%)
Frame = +2
Query: 179 KRRKESILDLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRDPDDPYKLL 358
KR+KES++DL+++L+K IRVKF GGREA+G+L+G+D LLN+VLD+ E+LRDP +P +
Sbjct: 7 KRKKESVVDLTRFLDKEIRVKFQGGREASGVLRGFDQLLNMVLDDCREYLRDPQNPSVVG 66
Query: 359 DDTRALGLVVCRGTSVVLICPMDGMEAIPNPFINQE 466
D+TR LGL+V RGT++ ++ P DG+E I NPF QE
Sbjct: 67 DETRQLGLIVARGTAITVVSPADGLEQIANPFATQE 102
>AF303264-1|AAG50222.1| 77|Caenorhabditis elegans SM protein G
protein.
Length = 77
Score = 56.4 bits (130), Expect = 1e-08
Identities = 27/75 (36%), Positives = 45/75 (60%)
Frame = +2
Query: 203 DLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRDPDDPYKLLDDTRALGL 382
+L KY++K + +K G R +GIL+G+DP +N+V+D E+ +D + LG+
Sbjct: 8 ELKKYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQKD--------GGSVNLGM 59
Query: 383 VVCRGTSVVLICPMD 427
V RG SVV++ P +
Sbjct: 60 TVIRGNSVVIMEPKE 74
>AC024201-5|AAF36015.1| 77|Caenorhabditis elegans Small nuclear
ribonucleoproteinprotein 7 protein.
Length = 77
Score = 56.4 bits (130), Expect = 1e-08
Identities = 27/75 (36%), Positives = 45/75 (60%)
Frame = +2
Query: 203 DLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRDPDDPYKLLDDTRALGL 382
+L KY++K + +K G R +GIL+G+DP +N+V+D E+ +D + LG+
Sbjct: 8 ELKKYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQKD--------GGSVNLGM 59
Query: 383 VVCRGTSVVLICPMD 427
V RG SVV++ P +
Sbjct: 60 TVIRGNSVVIMEPKE 74
>AC084197-12|AAL00875.1| 98|Caenorhabditis elegans Lsm sm-like
protein protein 8 protein.
Length = 98
Score = 45.2 bits (102), Expect = 3e-05
Identities = 26/74 (35%), Positives = 41/74 (55%)
Frame = +2
Query: 206 LSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRDPDDPYKLLDDTRALGLV 385
L Y+ + + V GR G+LKG+D L+NLV+++ E R + +L T LGL
Sbjct: 5 LDAYMNRMVNVVTGDGRVIVGLLKGFDQLINLVIEDAHE--RSYSETEGVL--TTPLGLY 60
Query: 386 VCRGTSVVLICPMD 427
+ RG +V +I +D
Sbjct: 61 IIRGENVAIIGEID 74
>Z69302-4|CAA93263.1| 125|Caenorhabditis elegans Hypothetical
protein F40F8.9 protein.
Length = 125
Score = 30.3 bits (65), Expect = 0.90
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +2
Query: 200 LDLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTE 322
+ L + L+K + V GR+ G L+ D NL+L++ E
Sbjct: 12 ISLFEQLDKKLLVVLRDGRKLIGFLRSIDQFANLILEDVVE 52
>Z81071-3|CAB03013.1| 91|Caenorhabditis elegans Hypothetical
protein F28F8.3 protein.
Length = 91
Score = 29.1 bits (62), Expect = 2.1
Identities = 17/72 (23%), Positives = 31/72 (43%)
Frame = +2
Query: 206 LSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRDPDDPYKLLDDTRALGLV 385
+ K + I V +E G L G+D +N+VL++ E+ D DT +
Sbjct: 18 IDKCIGSKIWVIMKNDKEIVGTLTGFDDYVNMVLEDVVEYENTADGKRMTKLDT-----I 72
Query: 386 VCRGTSVVLICP 421
+ G + ++ P
Sbjct: 73 LLNGNHITMLVP 84
>U88169-8|AAB42237.1| 866|Caenorhabditis elegans Holocentric
chromosome bindingprotein protein 4 protein.
Length = 866
Score = 28.3 bits (60), Expect = 3.6
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +2
Query: 128 EGGEKSKGSQVTGDNKEKR 184
EGGEK + S+VT D +E+R
Sbjct: 394 EGGEKRRTSKVTSDERERR 412
>AF321299-1|AAK07638.1| 866|Caenorhabditis elegans CENP-C-like
protein HCP-4 protein.
Length = 866
Score = 28.3 bits (60), Expect = 3.6
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +2
Query: 128 EGGEKSKGSQVTGDNKEKR 184
EGGEK + S+VT D +E+R
Sbjct: 394 EGGEKRRTSKVTSDERERR 412
>U41264-3|AAA82423.1| 574|Caenorhabditis elegans Hypothetical
protein F10E7.9 protein.
Length = 574
Score = 27.9 bits (59), Expect = 4.8
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -3
Query: 510 LPYLKIYSYQNYSYPSWLIKGFGIASIPSIGHIKT 406
+P+L Y+Y NYSY S L + +A++ ++T
Sbjct: 381 MPFLITYAYVNYSYVS-LAMSYDLATVQHADEVET 414
>Z70754-2|CAC42308.1| 764|Caenorhabditis elegans Hypothetical
protein F58E6.1b protein.
Length = 764
Score = 27.5 bits (58), Expect = 6.3
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +2
Query: 83 SDLKFDNCNTNMASKEGGEKSKGSQVTGDNKEKRR-KESILDLSKYL 220
SD+++ ++ ++ GG+ SK S + +EKRR +SI +S +L
Sbjct: 566 SDIEYGKIKISVKNRNGGKLSKSSNEFKEVREKRRVPKSIPVISVFL 612
>Z70754-1|CAA94771.2| 966|Caenorhabditis elegans Hypothetical
protein F58E6.1a protein.
Length = 966
Score = 27.5 bits (58), Expect = 6.3
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +2
Query: 83 SDLKFDNCNTNMASKEGGEKSKGSQVTGDNKEKRR-KESILDLSKYL 220
SD+++ ++ ++ GG+ SK S + +EKRR +SI +S +L
Sbjct: 566 SDIEYGKIKISVKNRNGGKLSKSSNEFKEVREKRRVPKSIPVISVFL 612
>AF164113-1|AAD45535.1| 810|Caenorhabditis elegans zinc finger
protein STAT-B protein.
Length = 810
Score = 27.5 bits (58), Expect = 6.3
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +2
Query: 83 SDLKFDNCNTNMASKEGGEKSKGSQVTGDNKEKRR-KESILDLSKYL 220
SD+++ ++ ++ GG+ SK S + +EKRR +SI +S +L
Sbjct: 612 SDIEYGKIKISVKNRNGGKLSKSSNEFKEVREKRRVPKSIPVISVFL 658
>Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical
protein F12F6.6 protein.
Length = 1126
Score = 27.1 bits (57), Expect = 8.4
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = -1
Query: 404 LMYLGKQQDLKLLCHPKVCMGHQDLLETP*YC 309
L + G++ D+++ P++C+G DL+ T YC
Sbjct: 496 LDHTGRRTDIEM--RPELCLGAYDLVATKQYC 525
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,482,291
Number of Sequences: 27780
Number of extensions: 201211
Number of successful extensions: 636
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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