Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_G01
(530 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g03870.2 68415.m00349 small nuclear ribonucleoprotein, putati... 129 1e-30
At2g03870.1 68415.m00348 small nuclear ribonucleoprotein, putati... 129 1e-30
At3g11500.1 68416.m01402 small nuclear ribonucleoprotein G, puta... 54 8e-08
At2g23930.1 68415.m02857 small nuclear ribonucleoprotein G, puta... 52 3e-07
At1g19120.1 68414.m02378 small nuclear ribonucleoprotein, putati... 40 0.001
At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associa... 40 0.001
At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associa... 40 0.001
At3g14080.2 68416.m01780 small nuclear ribonucleoprotein, putati... 37 0.007
At3g14080.1 68416.m01779 small nuclear ribonucleoprotein, putati... 37 0.007
At5g48870.1 68418.m06045 small nuclear ribonucleoprotein, putati... 36 0.023
At1g65700.1 68414.m07457 small nuclear ribonucleoprotein, putati... 36 0.023
At5g44500.1 68418.m05452 small nuclear ribonucleoprotein associa... 34 0.069
At1g03800.1 68414.m00361 ERF domain protein 10 (ERF10) identical... 31 0.64
At4g24540.1 68417.m03517 MADS-box family protein 29 2.6
At3g16130.1 68416.m02037 expressed protein contains Pfam profile... 28 4.5
At3g01490.1 68416.m00073 protein kinase, putative similar to ATM... 28 4.5
At1g03060.1 68414.m00280 WD-40 repeat family protein / beige-rel... 28 4.5
At4g21080.1 68417.m03048 Dof-type zinc finger domain-containing ... 27 7.9
At1g15990.1 68414.m01918 cyclic nucleotide-regulated ion channel... 27 7.9
>At2g03870.2 68415.m00349 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm7 [Homo sapiens]
SWISS-PROT:Q9UK45
Length = 99
Score = 129 bits (311), Expect = 1e-30
Identities = 56/94 (59%), Positives = 71/94 (75%)
Frame = +2
Query: 185 RKESILDLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRDPDDPYKLLDD 364
RKE++LDL+K+++K ++VK GGR+ G LKGYD LLNLVLD EF+RD DDP K D
Sbjct: 4 RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKTTDQ 63
Query: 365 TRALGLVVCRGTSVVLICPMDGMEAIPNPFINQE 466
TR LGL+VCRGT+V+L+ P DG E I NPF+ E
Sbjct: 64 TRRLGLIVCRGTAVMLVSPTDGTEEIANPFVTAE 97
>At2g03870.1 68415.m00348 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm7 [Homo sapiens]
SWISS-PROT:Q9UK45
Length = 99
Score = 129 bits (311), Expect = 1e-30
Identities = 56/94 (59%), Positives = 71/94 (75%)
Frame = +2
Query: 185 RKESILDLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRDPDDPYKLLDD 364
RKE++LDL+K+++K ++VK GGR+ G LKGYD LLNLVLD EF+RD DDP K D
Sbjct: 4 RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKTTDQ 63
Query: 365 TRALGLVVCRGTSVVLICPMDGMEAIPNPFINQE 466
TR LGL+VCRGT+V+L+ P DG E I NPF+ E
Sbjct: 64 TRRLGLIVCRGTAVMLVSPTDGTEEIANPFVTAE 97
>At3g11500.1 68416.m01402 small nuclear ribonucleoprotein G,
putative / snRNP-G, putative / Sm protein G, putative
similar to SWISS-PROT:Q15357 small nuclear
ribonucleoprotein G (snRNP-G, Sm protein G, Sm-G, SmG)
[Homo sapiens]
Length = 79
Score = 53.6 bits (123), Expect = 8e-08
Identities = 27/71 (38%), Positives = 40/71 (56%)
Frame = +2
Query: 203 DLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRDPDDPYKLLDDTRALGL 382
DL KY++K +++K R G L+G+D +NLV+DNT E DD +G+
Sbjct: 9 DLKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVEVNG---------DDKTDIGM 59
Query: 383 VVCRGTSVVLI 415
VV RG S+V +
Sbjct: 60 VVIRGNSIVTV 70
>At2g23930.1 68415.m02857 small nuclear ribonucleoprotein G,
putative / snRNP-G, putative / Sm protein G, putative
similar to small nuclear ribonucleoprotein G (snRNP-G,
Sm protein G, Sm-G, SmG) [Homo sapiens]
SWISS-PROT:Q15357
Length = 80
Score = 51.6 bits (118), Expect = 3e-07
Identities = 26/71 (36%), Positives = 40/71 (56%)
Frame = +2
Query: 203 DLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRDPDDPYKLLDDTRALGL 382
DL KY++K +++K R G L+G+D +NLV+DNT E +D +G+
Sbjct: 9 DLKKYMDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVEVNG---------NDKTDIGM 59
Query: 383 VVCRGTSVVLI 415
VV RG S+V +
Sbjct: 60 VVIRGNSIVTV 70
>At1g19120.1 68414.m02378 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm1 (Small nuclear
ribonuclear CaSm, Cancer-associated Sm-like) [Homo
sapiens] SWISS-PROT:O15116
Length = 128
Score = 39.9 bits (89), Expect = 0.001
Identities = 27/74 (36%), Positives = 39/74 (52%)
Frame = +2
Query: 206 LSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRDPDDPYKLLDDTRALGLV 385
L+ YL+K + V GR+ G+L+ +D N VL+ E + D L D LGL
Sbjct: 15 LAAYLDKKLLVLLRDGRKLMGLLRSFDQFANAVLEEAYERVIVGD----LYCDI-PLGLY 69
Query: 386 VCRGTSVVLICPMD 427
+ RG +VVLI +D
Sbjct: 70 IIRGENVVLIGELD 83
>At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|Q05856 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Drosophila melanogaster}
Length = 257
Score = 39.5 bits (88), Expect = 0.001
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Frame = +2
Query: 212 KYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRDPDDPYKLL----DDTRALG 379
+++ +RV GR+ G +D +NLVL + EF + P K + +D R LG
Sbjct: 11 QFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKINEEREDRRTLG 70
Query: 380 LVVCRGTSVV 409
LV+ RG V+
Sbjct: 71 LVLLRGEEVI 80
>At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|Q05856 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Drosophila melanogaster}
Length = 257
Score = 39.5 bits (88), Expect = 0.001
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Frame = +2
Query: 212 KYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRDPDDPYKLL----DDTRALG 379
+++ +RV GR+ G +D +NLVL + EF + P K + +D R LG
Sbjct: 11 QFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKINEEREDRRTLG 70
Query: 380 LVVCRGTSVV 409
LV+ RG V+
Sbjct: 71 LVLLRGEEVI 80
>At3g14080.2 68416.m01780 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm1 (Small nuclear
ribonuclear CaSm, Cancer-associated Sm-like) [Homo
sapiens] SWISS-PROT:O15116; contains Pfam profile:
PF01423 Sm protein
Length = 128
Score = 37.1 bits (82), Expect = 0.007
Identities = 24/74 (32%), Positives = 37/74 (50%)
Frame = +2
Query: 206 LSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRDPDDPYKLLDDTRALGLV 385
L+ YL++ + V GR+ G L+ +D N VL+ E + + + LGL
Sbjct: 15 LASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGEQYCDI-----PLGLY 69
Query: 386 VCRGTSVVLICPMD 427
V RG +VVLI +D
Sbjct: 70 VIRGENVVLIGELD 83
>At3g14080.1 68416.m01779 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm1 (Small nuclear
ribonuclear CaSm, Cancer-associated Sm-like) [Homo
sapiens] SWISS-PROT:O15116; contains Pfam profile:
PF01423 Sm protein
Length = 128
Score = 37.1 bits (82), Expect = 0.007
Identities = 24/74 (32%), Positives = 37/74 (50%)
Frame = +2
Query: 206 LSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRDPDDPYKLLDDTRALGLV 385
L+ YL++ + V GR+ G L+ +D N VL+ E + + + LGL
Sbjct: 15 LASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGEQYCDI-----PLGLY 69
Query: 386 VCRGTSVVLICPMD 427
V RG +VVLI +D
Sbjct: 70 VIRGENVVLIGELD 83
>At5g48870.1 68418.m06045 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm5 [Homo sapiens]
SWISS-PROT:Q9Y4Y9
Length = 88
Score = 35.5 bits (78), Expect = 0.023
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = +2
Query: 206 LSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEF 325
+ + + I V G +E GILKG+D +N+VL++ TE+
Sbjct: 14 IDRCIGSKIWVIMKGDKELVGILKGFDVYVNMVLEDVTEY 53
>At1g65700.1 68414.m07457 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm8 [Homo sapiens]
SWISS-PROT:O95777
Length = 98
Score = 35.5 bits (78), Expect = 0.023
Identities = 21/74 (28%), Positives = 37/74 (50%)
Frame = +2
Query: 206 LSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRDPDDPYKLLDDTRALGLV 385
L +++ I V GR G+LKG+D N++LD + E + + + LGL
Sbjct: 7 LETLVDQIISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQ----QHVLGLY 62
Query: 386 VCRGTSVVLICPMD 427
+ RG ++ +I +D
Sbjct: 63 IIRGDNIGVIGELD 76
>At5g44500.1 68418.m05452 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|P27048 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Mus musculus}
Length = 254
Score = 33.9 bits (74), Expect = 0.069
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Frame = +2
Query: 212 KYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRDP-----DDPYKLLDDTRAL 376
+++ +RV GR+ G +D +NLVL + EF + P + ++ R L
Sbjct: 11 QFINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGNKKTNEEREERRTL 70
Query: 377 GLVVCRGTSVV 409
GLV+ RG V+
Sbjct: 71 GLVLLRGEEVI 81
>At1g03800.1 68414.m00361 ERF domain protein 10 (ERF10) identical to
ERF domain protein 10 GI:11414990 from [Arabidopsis
thaliana]
Length = 245
Score = 30.7 bits (66), Expect = 0.64
Identities = 20/53 (37%), Positives = 29/53 (54%)
Frame = +2
Query: 98 DNCNTNMASKEGGEKSKGSQVTGDNKEKRRKESILDLSKYLEKSIRVKFAGGR 256
+N T +A K+GGEKSK G K K ++ L ++ EKS V++ G R
Sbjct: 6 ENVTTAVAVKDGGEKSKEVSDKGVKKRKNVTKA-LAVNDGGEKSKEVRYRGVR 57
>At4g24540.1 68417.m03517 MADS-box family protein
Length = 220
Score = 28.7 bits (61), Expect = 2.6
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +2
Query: 89 LKFDNCNTNMASKEGGEKSKG-SQVTGDNKEKRRKESILDLSKYLEKSI 232
L+ +NCN + SKE +K+K ++ G++ + E + L K LE +
Sbjct: 87 LRLENCNLSRLSKEVEDKTKQLRKLRGEDLDGLNLEELQRLEKLLESGL 135
>At3g16130.1 68416.m02037 expressed protein contains Pfam profile
PF03759: Domain of unknown function (DUF315)
Length = 576
Score = 27.9 bits (59), Expect = 4.5
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +2
Query: 77 VGSDLKFDNCNTNMASKEGGEKSKGSQVTGDNKEKRRKE 193
V S L N TN+A+ GE + ++ D KE+ R+E
Sbjct: 152 VSSALALSNAITNLAASAFGEIRRLEAISEDKKERWRRE 190
>At3g01490.1 68416.m00073 protein kinase, putative similar to ATMRK1
[Arabidopsis thaliana] gi|2351097|dbj|BAA22079
Length = 411
Score = 27.9 bits (59), Expect = 4.5
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = +2
Query: 143 SKGSQVTGDNKEKRRKESILDLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLV 304
SK + EK R+E +D SK + KS+ + G GI G D + L+
Sbjct: 84 SKNDIIRSTEVEKSRREWEIDPSKLIIKSVIARGTFGTVHRGIYDGQDVAVKLL 137
>At1g03060.1 68414.m00280 WD-40 repeat family protein / beige-related
similar to BEIGE (GI:3928547) [Rattus norvegicus];
Similar to gb|U70015 lysosomal trafficking regulator from
Mus musculus and contains 2 Pfam PF00400 WD-40, G-beta
repeats. ESTs gb|T43386 and gb|AA395236 come from this
gene
Length = 3601
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 80 GSDLKFDNCNTNMASKEGGEKSKGSQVTGDNK 175
GS D+ +T+M S G+K GS GD+K
Sbjct: 1293 GSMAILDSLDTDMTSSSNGQKFDGSNRQGDSK 1324
>At4g21080.1 68417.m03048 Dof-type zinc finger domain-containing
protein prolamin box binding factor, Zea mays,
PATCHX:G2393775
Length = 249
Score = 27.1 bits (57), Expect = 7.9
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +2
Query: 101 NCNTNMASKEGGEKSKGSQVTGDNKEKRRKESILDLSKYLEK 226
N N N S G + V DNK+ R + S++ +LEK
Sbjct: 205 NMNYNNDSTSGSSRGSDMNVNHDNKKIRYRNSVIMHPCHLEK 246
>At1g15990.1 68414.m01918 cyclic nucleotide-regulated ion channel,
putative (CNGC7) similar to cyclic nucleotide and
calmodulin-regulated ion channel protein GI:4581207 from
[Arabidopsis thaliana]
Length = 709
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +2
Query: 101 NCNTNMASKEGGEKSKGSQVTGDNKEKRRKESILDLSKYLEKSI 232
NC GGEK K S+ + +K R E ++ + K + +++
Sbjct: 6 NCFGFNLKNRGGEKKKASKSFREGVKKIRSEGLITIGKSVTRAV 49
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,846,659
Number of Sequences: 28952
Number of extensions: 189000
Number of successful extensions: 625
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 987020800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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