Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_F22
         (769 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote...    28   1.3  
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    28   1.3  
SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyce...    28   1.7  
SPAC6F12.03c |fsv1||SNARE Fsv1|Schizosaccharomyces pombe|chr 1||...    27   2.2  
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ...    27   3.9  
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe...    26   5.2  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    26   6.8  
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce...    26   6.8  
SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces ...    26   6.8  
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa...    25   9.0  
SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.0  
SPAC4G9.15 |||ketoreductase |Schizosaccharomyces pombe|chr 1|||M...    25   9.0  

>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
           kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +3

Query: 546 SDTKNSLTPDDEIHSSEDEAVASDLDMHALILGGLHQDHECPVKTADE 689
           SDTKNS   D++I     E   +   + A  L  L Q H  P++T+ E
Sbjct: 183 SDTKNSTEADEDIEMKSREVSPASNSVAATTLKPL-QLHNTPLQTSQE 229


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = -3

Query: 296 IPFAVLHVVLFTLHQSRFFVVIYFVGISFSFDHFTFQIV 180
           IPF V+ + LF++  S +F  +YF+   F F  F F I+
Sbjct: 496 IPFLVILIELFSILDSLWFHPLYFM---FGFSFFCFGIL 531


>SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 330

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 17/83 (20%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
 Frame = +3

Query: 381 EENVEKLAPVQVRSQEEIMNECQMWWTITGNFGNILPIDWTKSFSRKMHIPTL--NLSDT 554
           ++N EK++ +Q   +EE+ N        TGNF +  P     ++     + TL  +  +T
Sbjct: 77  QQNPEKISTLQQVKEEEVSNTFSAPLNATGNFSSANPASIDLAYLDLQKLLTLPDHSKET 136

Query: 555 KNSLTPDDEIHSSEDEAVASDLD 623
           +   +   E+   +    ++  D
Sbjct: 137 QEKTSSQRELFEQKSSVASASKD 159


>SPAC6F12.03c |fsv1||SNARE Fsv1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 247

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +3

Query: 486 LPIDWTKSFSRKMHIPTLNLSDTKNSLTPDDEIHSSEDEAVASDLDMHAL 635
           +P D T +FS    +     + T N LTP   +  +   +  SD++M A+
Sbjct: 94  IPADGTSAFSANPQV-----ASTNNKLTPLPSLQKTTSSSEGSDIEMEAM 138


>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1237

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 18/74 (24%), Positives = 33/74 (44%)
 Frame = +3

Query: 381 EENVEKLAPVQVRSQEEIMNECQMWWTITGNFGNILPIDWTKSFSRKMHIPTLNLSDTKN 560
           E  ++   PV+V+     + EC ++W I  +    L +D+ +   +K       L  + +
Sbjct: 355 EYRLQVTDPVEVKQINTFIRECSIYWRILPSTRCALSMDFAREHLQK------GLITSAD 408

Query: 561 SLTPDDEIHSSEDE 602
            LT   E+H S  E
Sbjct: 409 VLTHFGELHKSLKE 422


>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -3

Query: 722 VLHHIVYFLNHFVSS 678
           V+HH+ YF+N F+SS
Sbjct: 742 VVHHLNYFMNSFLSS 756


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -3

Query: 401  QLLDVLLIVSETFRDFLIEGVHQIFKRTGESLSEIIPFAV 282
            +L+++       F D LI G  +IF     S + +IPFA+
Sbjct: 1055 RLINLTQTSQRMFHDALISGFFKIFSAAVVSATLLIPFAL 1094


>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 747

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 16/75 (21%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
 Frame = -3

Query: 347 EGVHQIFKRTGESLSEIIPFAVLHVVLFTLHQSRFFVVIYFVGISFSF-DHFTFQIVNVV 171
           +GV+ + K   +    I P  VLHV++  L     +V +  +    S  D +   ++ ++
Sbjct: 541 QGVYMLRKLIEKKDDRINPVRVLHVLINLLRDENSYVHLNVISAVVSLCDKYDDSLIRLL 600

Query: 170 KDXIAVERLTGEXRL 126
           K+     + T +  L
Sbjct: 601 KEYTNTNKFTVDETL 615


>SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 263

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 19/92 (20%), Positives = 42/92 (45%), Gaps = 4/92 (4%)
 Frame = +3

Query: 462 ITGNFGNILP-IDWTKSFSRKMHIPTLNLSDTKNSLTPDDEIHSSEDEAVASDLDM---H 629
           +  NFG + P I +  +  R  +   L     +  ++   E +S ED    +   +   H
Sbjct: 58  VPDNFGVVYPGIIYRSACPRASNFNFLESLHIRTIISLRQEEYSEEDLHYFTKHHINYYH 117

Query: 630 ALILGGLHQDHECPVKTADEVIQEIDDMMQDT 725
             + G  H+ ++C   +++  I ++DD+++ T
Sbjct: 118 IAMPGSKHRKNDCISSSSNPDISDVDDLVRKT 149


>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
           Brl2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 680

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +3

Query: 243 EPRLVKCKQD-NMQNGEGDNFTETFSGSLEDLVNTFDEKIT 362
           E  L +C  + N+ + +  NF   F  S + L+N  D +I+
Sbjct: 311 EHLLSECSHEINVLSQQSKNFNGVFESSYQPLINDLDHQIS 351


>SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 433

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +3

Query: 552 TKNSLTPDDEIHSSEDEAVASDLDMHALILGGLHQDHECPVKTADEVIQEIDD 710
           +K +L PD E+   EDE       + AL+  G +      V ++DE ++ + D
Sbjct: 278 SKGALNPDPEVIEPEDEPTTFRNPLEALLSTGQYS-----VVSSDEDVESVRD 325


>SPAC4G9.15 |||ketoreductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 14/66 (21%), Positives = 33/66 (50%)
 Frame = +3

Query: 519 KMHIPTLNLSDTKNSLTPDDEIHSSEDEAVASDLDMHALILGGLHQDHECPVKTADEVIQ 698
           K+   T+ +  TK +    +++H    + V + +    +++  + Q H  P   A+  ++
Sbjct: 106 KVKTRTIAIDYTKTTAETFEKLHQ---DLVGTPI---TVLINNVGQSHYMPTSFAETTVK 159

Query: 699 EIDDMM 716
           E+DD+M
Sbjct: 160 EMDDIM 165


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,849,917
Number of Sequences: 5004
Number of extensions: 56552
Number of successful extensions: 252
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)