Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_F22
         (769 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0292 - 2200714-2201478,2202691-2203395                           33   0.33 
01_05_0410 + 21914995-21915168,21915268-21915353,21915446-219156...    31   0.77 
05_01_0313 - 2461487-2461861,2461929-2462513,2462819-2464154,246...    29   4.1  
02_02_0134 + 7082462-7082627,7084199-7084325,7084404-7084611,708...    29   5.4  
04_04_1273 - 32307273-32307569,32307659-32307791,32307874-323081...    28   9.4  
04_03_0583 + 17539541-17539978                                         28   9.4  

>11_01_0292 - 2200714-2201478,2202691-2203395
          Length = 489

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = -3

Query: 311 SLSEIIPFAVLHVVLFTLHQSRFFV--VIYFVGISFSFDHFTFQIVNVVKDXIA 156
           S S  IPF     ++F L QSRF +  V+ FV IS +  HF F+    + + IA
Sbjct: 279 SFSSFIPFDSR--IVFLLPQSRFPIWSVVLFVSISLALSHFIFEKEAPITENIA 330


>01_05_0410 +
           21914995-21915168,21915268-21915353,21915446-21915656,
           21915869-21915998,21916740-21916924,21917014-21917145,
           21917329-21917433
          Length = 340

 Score = 31.5 bits (68), Expect = 0.77
 Identities = 20/68 (29%), Positives = 35/68 (51%)
 Frame = -3

Query: 428 LLRANLHWRQLLDVLLIVSETFRDFLIEGVHQIFKRTGESLSEIIPFAVLHVVLFTLHQS 249
           LL+   H  Q L +L  + + ++    EG+   +K  G S+  I+P+A LH +  T  Q 
Sbjct: 56  LLQTRTHGFQSLGILQSLRKLWQ---YEGIRGFYKGNGASVLRIVPYAALHYM--TYEQY 110

Query: 248 RFFVVIYF 225
           R +++  F
Sbjct: 111 RCWILNNF 118


>05_01_0313 -
           2461487-2461861,2461929-2462513,2462819-2464154,
           2464231-2464338,2464421-2464743
          Length = 908

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
 Frame = +3

Query: 441 ECQMWWTITGNFGNILPIDWTKSFSRKMHIPTL--NLSDTKNSLTPDDEIHSSEDEAV-A 611
           E    W +T N  ++    W    S+K+ +PT   N   +   L   + I SS D AV  
Sbjct: 656 ETPQGWVLTLNPASLQTFLWRPQDSKKIDLPTAKQNFPRSGKCLLSGNPISSSSDCAVLV 715

Query: 612 SDLDMHALIL 641
            DLD  A+++
Sbjct: 716 LDLDTPAMLV 725


>02_02_0134 +
           7082462-7082627,7084199-7084325,7084404-7084611,
           7084864-7084990,7085071-7085255,7085332-7085454,
           7085777-7085836,7085980-7086117
          Length = 377

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 17/69 (24%), Positives = 34/69 (49%)
 Frame = -3

Query: 422 RANLHWRQLLDVLLIVSETFRDFLIEGVHQIFKRTGESLSEIIPFAVLHVVLFTLHQSRF 243
           RA  H   L+     +S T      EG+   ++  G S++ I+P+A LH + +   + R 
Sbjct: 72  RAEFHGSGLIGSFRTISRT------EGLLGFYRGNGASVARIVPYAALHYMAY--EEYRR 123

Query: 242 FVVIYFVGI 216
           ++++ F  +
Sbjct: 124 WIILGFPNV 132


>04_04_1273 -
           32307273-32307569,32307659-32307791,32307874-32308105,
           32308220-32308436,32308594-32308718,32309416-32310757
          Length = 781

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = -3

Query: 422 RANLHWRQLLDVLLIVSE 369
           RANLHWR+ LD++  +++
Sbjct: 567 RANLHWRRRLDIIQAIAK 584


>04_03_0583 + 17539541-17539978
          Length = 145

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 17/38 (44%), Positives = 18/38 (47%)
 Frame = +1

Query: 343 PSMRKSRNVSETMRRTSRSWRQCRFARRRKS*TNAKCG 456
           P  RK R      RR  R WR  R ARRR   TN + G
Sbjct: 13  PGRRKGR---PKRRRRQRGWRGRRNARRRGLQTNQRAG 47


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,066,949
Number of Sequences: 37544
Number of extensions: 373553
Number of successful extensions: 1200
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1200
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)