Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_F22
         (769 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2439| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.4  
SB_54271| Best HMM Match : Patatin (HMM E-Value=7.2e-25)               29   5.5  
SB_24814| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_30073| Best HMM Match : RVT_1 (HMM E-Value=3e-26)                   28   7.2  
SB_56227| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_30684| Best HMM Match : 7tm_1 (HMM E-Value=9.3e-11)                 28   7.2  
SB_24979| Best HMM Match : DUF1309 (HMM E-Value=7.8)                   28   9.5  
SB_48385| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_47982| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  

>SB_2439| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 951

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 19/62 (30%), Positives = 28/62 (45%)
 Frame = -3

Query: 329 FKRTGESLSEIIPFAVLHVVLFTLHQSRFFVVIYFVGISFSFDHFTFQIVNVVKDXIAVE 150
           F  TGES  +  P   LH +L +L +   +V I+F   S  FD     ++    D + V 
Sbjct: 752 FSVTGESTVQA-PVYFLHCILESLKRGENYVRIFFADFSKGFDLVDHNVLMSELDLLGVN 810

Query: 149 RL 144
            L
Sbjct: 811 EL 812


>SB_54271| Best HMM Match : Patatin (HMM E-Value=7.2e-25)
          Length = 337

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 19/64 (29%), Positives = 28/64 (43%)
 Frame = +3

Query: 459 TITGNFGNILPIDWTKSFSRKMHIPTLNLSDTKNSLTPDDEIHSSEDEAVASDLDMHALI 638
           T+  +F  ILP +  +  S ++HI    +SD  N +    E HS ED   A     H   
Sbjct: 91  TLRRSFEKILPENAHELASGRLHISLTRVSDFTNLIV--SEFHSKEDLIEALMASSHVPF 148

Query: 639 LGGL 650
             G+
Sbjct: 149 YSGI 152


>SB_24814| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 867

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/54 (24%), Positives = 31/54 (57%)
 Frame = +3

Query: 282 NGEGDNFTETFSGSLEDLVNTFDEKITKCFGNYEENVEKLAPVQVRSQEEIMNE 443
           +GE  N T  F+G +E L   F ++  +   +Y+  + +L    ++S++E++++
Sbjct: 776 DGELANLTSQFTGEMEQLQKNFVKEREEMEKDYQSQINELEE-SLKSEKEVLSK 828


>SB_30073| Best HMM Match : RVT_1 (HMM E-Value=3e-26)
          Length = 416

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = -3

Query: 329 FKRTGESLSEIIPFAVLHVVLFTLHQSRFFVVIYFVGISFSFD 201
           F  +G S +  + + +LH++L  L +   F+ ++F   S  FD
Sbjct: 128 FSMSGRSTTHALVY-MLHIILAALDKGNCFIRVFFADFSKGFD 169


>SB_56227| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 757

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = -1

Query: 613 EATASSSELWISSSGVNEFFVSLKFNVGICIFLEKDLVQSIGKMFPKLPVI 461
           +  AS  E W S   VN  F +   +VGI +++    + SI K FP +P +
Sbjct: 377 DCAASKDEKWRSDQLVNLTFSAR--HVGISVWVITQQLTSITKPFPAVPAL 425


>SB_30684| Best HMM Match : 7tm_1 (HMM E-Value=9.3e-11)
          Length = 540

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = -3

Query: 509 RFGPVNR*DVPEVA-SDCPPHLAFVHDFLLRANLHWRQLLDVLLIVSETF 363
           R+G ++R D+ ++  +D P H+    D+ LRA L   +++D +    ET+
Sbjct: 73  RWGAMSRLDMDQIELTDSPKHVMLTADYDLRAQLCGDEVIDSIEERCETY 122


>SB_24979| Best HMM Match : DUF1309 (HMM E-Value=7.8)
          Length = 404

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +3

Query: 429 EIMNEC-QMWWTITGNFGNILPIDWTKSFSRKM 524
           +IMN   Q+  TIT  FG IL +D TK   +K+
Sbjct: 132 DIMNRMDQIKATITSTFGTILKMDSTKKIVKKL 164


>SB_48385| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 386

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/60 (23%), Positives = 21/60 (35%)
 Frame = +3

Query: 231 NDNEEPRLVKCKQDNMQNGEGDNFTETFSGSLEDLVNTFDEKITKCFGNYEENVEKLAPV 410
           NDN          DN  +       +  + S   + N ++   T  F NY  N    AP+
Sbjct: 288 NDNNASSTASIANDNNASSTAPIANDYNASSTAPIANDYNASSTAPFANYYNNTSSTAPI 347


>SB_47982| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 709

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 591 SEDEAVASDLDMHALILGGLHQDHECP 671
           S  + +   LD+H L+LG LH  H+ P
Sbjct: 402 SNQKRLVGILDLHELLLGVLHPSHDRP 428


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,822,217
Number of Sequences: 59808
Number of extensions: 426724
Number of successful extensions: 1464
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1459
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)