Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_F21
         (803 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2 pr...    27   0.23 
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    27   0.23 
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    22   5.0  
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    22   5.0  
EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    22   6.6  
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    22   6.6  

>EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2
           protein.
          Length = 237

 Score = 26.6 bits (56), Expect = 0.23
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -1

Query: 491 HRSFLQKVFVSKS*LSQDRNMCNSRVCKHRCGDGVAHDRRAAV 363
           H   L  +F  +S      N  N    +++C  G+A+DR A V
Sbjct: 94  HCERLYGIFADESKCDVFWNCWNGEASRYQCSPGLAYDREARV 136


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 26.6 bits (56), Expect = 0.23
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -1

Query: 491 HRSFLQKVFVSKS*LSQDRNMCNSRVCKHRCGDGVAHDRRAAV 363
           H   L  +F  +S      N  N    +++C  G+A+DR A V
Sbjct: 94  HCERLYGIFADESKCDVFWNCWNGEASRYQCSPGLAYDREARV 136


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -1

Query: 692 RMYIYTRLMRHGSWSHC 642
           RMYI T  +  G W  C
Sbjct: 161 RMYINTESVLDGDWKKC 177


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +1

Query: 220 TLALYTCKLRLW 255
           +L  YTC+L+LW
Sbjct: 49  SLKQYTCELKLW 60


>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +2

Query: 749 NIWCSFYLSWTLV 787
           N WCS Y+ W  V
Sbjct: 486 NNWCSPYIGWQKV 498


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 132 SLVPLAQPPHHPA 170
           S  PL  PPH+PA
Sbjct: 14  STSPLLTPPHNPA 26


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,537
Number of Sequences: 336
Number of extensions: 2776
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21895259
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)