SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_F21
         (803 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0184 - 21006659-21009823                                         31   1.1  
04_01_0589 + 7704262-7704429,7704718-7705540,7705844-7706484           30   2.5  
12_02_0772 - 23029703-23029715,23029835-23030463,23030637-230316...    29   5.7  
10_06_0007 + 9510385-9510535,9510860-9511433,9511553-9511565           29   5.7  
10_05_0085 - 9005539-9005922,9006207-9006463,9006707-9006883,900...    29   5.7  
09_04_0085 + 14441123-14443507,14443731-14443787                       29   5.7  
08_02_0009 + 11216532-11218687,11220727-11225998                       29   5.7  
08_02_0003 + 11180421-11180757,11180773-11185715                       29   5.7  
08_02_0002 + 11173365-11173512,11173528-11178470                       29   5.7  
08_01_0483 - 4243963-4244019,4244243-4245797,4246335-4246651           29   5.7  
06_01_0223 - 1709897-1709912,1710188-1712520                           29   5.7  
04_03_0024 - 9623178-9624001,9624502-9624678,9625144-9625305,962...    29   5.7  
01_01_0100 - 755894-756662,757086-757598,758718-761050                 29   5.7  
10_08_0452 - 18038182-18038253,18038338-18038415,18038502-180385...    28   7.6  
02_02_0337 - 9096588-9096603,9096879-9097927                           28   7.6  
01_01_1018 - 8046819-8046876,8046995-8047212,8048099-8048177,804...    28   10.0 

>11_06_0184 - 21006659-21009823
          Length = 1054

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 17/42 (40%), Positives = 20/42 (47%)
 Frame = -3

Query: 270 GRRDAPEP*LAGVERER**PPLYPGDDHGDPAPAQDGEAVAP 145
           G +D P P   GV+R+   PP   GDD   P P  DG    P
Sbjct: 272 GDKDQPLPPDCGVKRQL--PPQSDGDDKQQPPPQSDGSDQPP 311


>04_01_0589 + 7704262-7704429,7704718-7705540,7705844-7706484
          Length = 543

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 10/29 (34%), Positives = 22/29 (75%)
 Frame = -3

Query: 510 LKEQPEPQIVSSESVRVQELIESGQEHVQ 424
           LK+QP+PQ++++++  V+EL++  +   Q
Sbjct: 89  LKDQPQPQVMANQTQTVEELLQQMRHRYQ 117


>12_02_0772 -
           23029703-23029715,23029835-23030463,23030637-23031673,
           23031830-23032166
          Length = 671

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = -1

Query: 683 IYTRLMRHGSWSHCDYRSCYSMSYKGGSHGVSQNRGNHSMGHQSRLRNNV 534
           I T +    S  H DY  C  +     S+G  + R      HQ+R  NN+
Sbjct: 614 ICTGIQAQRSMKHSDYNFCNKIVQIPLSYGEDKPRSKRIYKHQNRNNNNI 663


>10_06_0007 + 9510385-9510535,9510860-9511433,9511553-9511565
          Length = 245

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = -1

Query: 683 IYTRLMRHGSWSHCDYRSCYSMSYKGGSHGVSQNRGNHSMGHQSRLRNNV 534
           I T +    S  H DY  C  +     S+G  + R      HQ+R  NN+
Sbjct: 188 ICTGIQAQRSMKHSDYNFCNKIVQIPLSYGEDKPRSKRIYKHQNRNNNNI 237


>10_05_0085 -
           9005539-9005922,9006207-9006463,9006707-9006883,
           9007349-9007490,9007814-9007904,9009024-9010942
          Length = 989

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = -1

Query: 683 IYTRLMRHGSWSHCDYRSCYSMSYKGGSHGVSQNRGNHSMGHQSRLRNNV 534
           I T +    S  H DY  C  +     S+G  + R      HQ+R  NN+
Sbjct: 586 ICTGIQAQRSMKHSDYNFCNKIVQIPLSYGEDKPRSKRIYKHQNRNNNNI 635


>09_04_0085 + 14441123-14443507,14443731-14443787
          Length = 813

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = -1

Query: 683 IYTRLMRHGSWSHCDYRSCYSMSYKGGSHGVSQNRGNHSMGHQSRLRNNV 534
           I T +    S  H DY  C  +     S+G  + R      HQ+R  NN+
Sbjct: 724 ICTGIQAQRSMKHSDYNFCNKIVQIPLSYGEDKPRSKRIYKHQNRNHNNI 773


>08_02_0009 + 11216532-11218687,11220727-11225998
          Length = 2475

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = -1

Query: 683  IYTRLMRHGSWSHCDYRSCYSMSYKGGSHGVSQNRGNHSMGHQSRLRNNV 534
            I T +    S  H DY  C  +     S+G  + R      HQ+R  NN+
Sbjct: 1425 ICTGIQAQRSMKHSDYNFCNKIVQIPLSYGEDKPRSKRIYKHQNRNHNNI 1474


>08_02_0003 + 11180421-11180757,11180773-11185715
          Length = 1759

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = -1

Query: 683 IYTRLMRHGSWSHCDYRSCYSMSYKGGSHGVSQNRGNHSMGHQSRLRNNV 534
           I T +    S  H DY  C  +     S+G  + R      HQ+R  NN+
Sbjct: 709 ICTGIQAQRSMKHSDYNFCNKIVQIPLSYGEDKPRSKRIYKHQNRNHNNI 758


>08_02_0002 + 11173365-11173512,11173528-11178470
          Length = 1696

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = -1

Query: 683 IYTRLMRHGSWSHCDYRSCYSMSYKGGSHGVSQNRGNHSMGHQSRLRNNV 534
           I T +    S  H DY  C  +     S+G  + R      HQ+R  NN+
Sbjct: 646 ICTGIQAQRSMKHSDYNFCNKIVQIPLSYGEDKPRSKRIYKHQNRNHNNI 695


>08_01_0483 - 4243963-4244019,4244243-4245797,4246335-4246651
          Length = 642

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = -1

Query: 683 IYTRLMRHGSWSHCDYRSCYSMSYKGGSHGVSQNRGNHSMGHQSRLRNNV 534
           I T +    S  H DY  C  +     S+G  + R      HQ+R  NN+
Sbjct: 553 ICTGIQAQRSMKHSDYNFCNKIVQIPLSYGEDKPRSKRIYKHQNRNHNNI 602


>06_01_0223 - 1709897-1709912,1710188-1712520
          Length = 782

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = -1

Query: 683 IYTRLMRHGSWSHCDYRSCYSMSYKGGSHGVSQNRGNHSMGHQSRLRNNV 534
           I T +    S  H DY  C  +     S+G  + R      HQ+R  NN+
Sbjct: 724 ICTGIQAQRSMKHSDYNFCNKIVQIPLSYGEDKPRSKRIYKHQNRNNNNI 773


>04_03_0024 -
           9623178-9624001,9624502-9624678,9625144-9625305,
           9625520-9626032,9626801-9629153
          Length = 1342

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = -1

Query: 683 IYTRLMRHGSWSHCDYRSCYSMSYKGGSHGVSQNRGNHSMGHQSRLRNNV 534
           I T +    S  H DY  C  +     S+G  + R      HQ+R  NN+
Sbjct: 724 ICTGIQAQRSMKHSDYNFCNKIVQIPLSYGEDKPRSKRIYKHQNRNNNNI 773


>01_01_0100 - 755894-756662,757086-757598,758718-761050
          Length = 1204

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = -1

Query: 683 IYTRLMRHGSWSHCDYRSCYSMSYKGGSHGVSQNRGNHSMGHQSRLRNNV 534
           I T +    S  H DY  C  +     S+G  + R      HQ+R  NN+
Sbjct: 724 ICTGIQAQRSMKHSDYNFCNKIVQIPLSYGEDKPRSKRIYKHQNRNHNNI 773


>10_08_0452 -
           18038182-18038253,18038338-18038415,18038502-18038579,
           18039112-18039168,18039276-18039349,18039424-18039495,
           18039609-18039670,18039861-18039962,18040378-18040490,
           18040809-18040940,18041156-18041243,18041617-18041711,
           18041793-18042023,18042567-18042680,18042765-18042866,
           18043091-18043207,18043301-18044146
          Length = 810

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -3

Query: 180 PAPAQDGEAVAPMAPKNRRPLRLKRITPPTRS 85
           PA   DG AVA    K   P++ KR + PT+S
Sbjct: 49  PAAEADGGAVAKPEEKPHSPVKPKRSSSPTKS 80


>02_02_0337 - 9096588-9096603,9096879-9097927
          Length = 354

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = -1

Query: 683 IYTRLMRHGSWSHCDYRSCYSMSYKGGSHGVSQNRGNHSMGHQSRLRNNV 534
           I T +    S  H DY  C  +     S+G  + R      HQ+R  NN+
Sbjct: 296 ICTGIQAQRSMKHSDYNFCNKIVQIPLSYGEDKPRSKKIYKHQNRNNNNI 345


>01_01_1018 -
           8046819-8046876,8046995-8047212,8048099-8048177,
           8048455-8048540,8048698-8048983,8049063-8049205,
           8049308-8049508,8049626-8049754,8050463-8050738,
           8050823-8051098,8051364-8052364,8052452-8052634,
           8052865-8052937,8053205-8053313,8053622-8053785
          Length = 1093

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -1

Query: 626 YSMSYKGGSHGVSQNRGNHSMGHQSRLRNNVNAC 525
           ++  ++G S   S N  NH M HQ     N  AC
Sbjct: 301 HTSDHEGFSREKSSNLSNHFMHHQQGFMTNYGAC 334


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,113,782
Number of Sequences: 37544
Number of extensions: 340127
Number of successful extensions: 1181
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1181
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -