Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_F21
(803 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0184 - 21006659-21009823 31 1.1
04_01_0589 + 7704262-7704429,7704718-7705540,7705844-7706484 30 2.5
12_02_0772 - 23029703-23029715,23029835-23030463,23030637-230316... 29 5.7
10_06_0007 + 9510385-9510535,9510860-9511433,9511553-9511565 29 5.7
10_05_0085 - 9005539-9005922,9006207-9006463,9006707-9006883,900... 29 5.7
09_04_0085 + 14441123-14443507,14443731-14443787 29 5.7
08_02_0009 + 11216532-11218687,11220727-11225998 29 5.7
08_02_0003 + 11180421-11180757,11180773-11185715 29 5.7
08_02_0002 + 11173365-11173512,11173528-11178470 29 5.7
08_01_0483 - 4243963-4244019,4244243-4245797,4246335-4246651 29 5.7
06_01_0223 - 1709897-1709912,1710188-1712520 29 5.7
04_03_0024 - 9623178-9624001,9624502-9624678,9625144-9625305,962... 29 5.7
01_01_0100 - 755894-756662,757086-757598,758718-761050 29 5.7
10_08_0452 - 18038182-18038253,18038338-18038415,18038502-180385... 28 7.6
02_02_0337 - 9096588-9096603,9096879-9097927 28 7.6
01_01_1018 - 8046819-8046876,8046995-8047212,8048099-8048177,804... 28 10.0
>11_06_0184 - 21006659-21009823
Length = 1054
Score = 31.1 bits (67), Expect = 1.1
Identities = 17/42 (40%), Positives = 20/42 (47%)
Frame = -3
Query: 270 GRRDAPEP*LAGVERER**PPLYPGDDHGDPAPAQDGEAVAP 145
G +D P P GV+R+ PP GDD P P DG P
Sbjct: 272 GDKDQPLPPDCGVKRQL--PPQSDGDDKQQPPPQSDGSDQPP 311
>04_01_0589 + 7704262-7704429,7704718-7705540,7705844-7706484
Length = 543
Score = 29.9 bits (64), Expect = 2.5
Identities = 10/29 (34%), Positives = 22/29 (75%)
Frame = -3
Query: 510 LKEQPEPQIVSSESVRVQELIESGQEHVQ 424
LK+QP+PQ++++++ V+EL++ + Q
Sbjct: 89 LKDQPQPQVMANQTQTVEELLQQMRHRYQ 117
>12_02_0772 -
23029703-23029715,23029835-23030463,23030637-23031673,
23031830-23032166
Length = 671
Score = 28.7 bits (61), Expect = 5.7
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = -1
Query: 683 IYTRLMRHGSWSHCDYRSCYSMSYKGGSHGVSQNRGNHSMGHQSRLRNNV 534
I T + S H DY C + S+G + R HQ+R NN+
Sbjct: 614 ICTGIQAQRSMKHSDYNFCNKIVQIPLSYGEDKPRSKRIYKHQNRNNNNI 663
>10_06_0007 + 9510385-9510535,9510860-9511433,9511553-9511565
Length = 245
Score = 28.7 bits (61), Expect = 5.7
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = -1
Query: 683 IYTRLMRHGSWSHCDYRSCYSMSYKGGSHGVSQNRGNHSMGHQSRLRNNV 534
I T + S H DY C + S+G + R HQ+R NN+
Sbjct: 188 ICTGIQAQRSMKHSDYNFCNKIVQIPLSYGEDKPRSKRIYKHQNRNNNNI 237
>10_05_0085 -
9005539-9005922,9006207-9006463,9006707-9006883,
9007349-9007490,9007814-9007904,9009024-9010942
Length = 989
Score = 28.7 bits (61), Expect = 5.7
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = -1
Query: 683 IYTRLMRHGSWSHCDYRSCYSMSYKGGSHGVSQNRGNHSMGHQSRLRNNV 534
I T + S H DY C + S+G + R HQ+R NN+
Sbjct: 586 ICTGIQAQRSMKHSDYNFCNKIVQIPLSYGEDKPRSKRIYKHQNRNNNNI 635
>09_04_0085 + 14441123-14443507,14443731-14443787
Length = 813
Score = 28.7 bits (61), Expect = 5.7
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = -1
Query: 683 IYTRLMRHGSWSHCDYRSCYSMSYKGGSHGVSQNRGNHSMGHQSRLRNNV 534
I T + S H DY C + S+G + R HQ+R NN+
Sbjct: 724 ICTGIQAQRSMKHSDYNFCNKIVQIPLSYGEDKPRSKRIYKHQNRNHNNI 773
>08_02_0009 + 11216532-11218687,11220727-11225998
Length = 2475
Score = 28.7 bits (61), Expect = 5.7
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = -1
Query: 683 IYTRLMRHGSWSHCDYRSCYSMSYKGGSHGVSQNRGNHSMGHQSRLRNNV 534
I T + S H DY C + S+G + R HQ+R NN+
Sbjct: 1425 ICTGIQAQRSMKHSDYNFCNKIVQIPLSYGEDKPRSKRIYKHQNRNHNNI 1474
>08_02_0003 + 11180421-11180757,11180773-11185715
Length = 1759
Score = 28.7 bits (61), Expect = 5.7
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = -1
Query: 683 IYTRLMRHGSWSHCDYRSCYSMSYKGGSHGVSQNRGNHSMGHQSRLRNNV 534
I T + S H DY C + S+G + R HQ+R NN+
Sbjct: 709 ICTGIQAQRSMKHSDYNFCNKIVQIPLSYGEDKPRSKRIYKHQNRNHNNI 758
>08_02_0002 + 11173365-11173512,11173528-11178470
Length = 1696
Score = 28.7 bits (61), Expect = 5.7
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = -1
Query: 683 IYTRLMRHGSWSHCDYRSCYSMSYKGGSHGVSQNRGNHSMGHQSRLRNNV 534
I T + S H DY C + S+G + R HQ+R NN+
Sbjct: 646 ICTGIQAQRSMKHSDYNFCNKIVQIPLSYGEDKPRSKRIYKHQNRNHNNI 695
>08_01_0483 - 4243963-4244019,4244243-4245797,4246335-4246651
Length = 642
Score = 28.7 bits (61), Expect = 5.7
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = -1
Query: 683 IYTRLMRHGSWSHCDYRSCYSMSYKGGSHGVSQNRGNHSMGHQSRLRNNV 534
I T + S H DY C + S+G + R HQ+R NN+
Sbjct: 553 ICTGIQAQRSMKHSDYNFCNKIVQIPLSYGEDKPRSKRIYKHQNRNHNNI 602
>06_01_0223 - 1709897-1709912,1710188-1712520
Length = 782
Score = 28.7 bits (61), Expect = 5.7
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = -1
Query: 683 IYTRLMRHGSWSHCDYRSCYSMSYKGGSHGVSQNRGNHSMGHQSRLRNNV 534
I T + S H DY C + S+G + R HQ+R NN+
Sbjct: 724 ICTGIQAQRSMKHSDYNFCNKIVQIPLSYGEDKPRSKRIYKHQNRNNNNI 773
>04_03_0024 -
9623178-9624001,9624502-9624678,9625144-9625305,
9625520-9626032,9626801-9629153
Length = 1342
Score = 28.7 bits (61), Expect = 5.7
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = -1
Query: 683 IYTRLMRHGSWSHCDYRSCYSMSYKGGSHGVSQNRGNHSMGHQSRLRNNV 534
I T + S H DY C + S+G + R HQ+R NN+
Sbjct: 724 ICTGIQAQRSMKHSDYNFCNKIVQIPLSYGEDKPRSKRIYKHQNRNNNNI 773
>01_01_0100 - 755894-756662,757086-757598,758718-761050
Length = 1204
Score = 28.7 bits (61), Expect = 5.7
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = -1
Query: 683 IYTRLMRHGSWSHCDYRSCYSMSYKGGSHGVSQNRGNHSMGHQSRLRNNV 534
I T + S H DY C + S+G + R HQ+R NN+
Sbjct: 724 ICTGIQAQRSMKHSDYNFCNKIVQIPLSYGEDKPRSKRIYKHQNRNHNNI 773
>10_08_0452 -
18038182-18038253,18038338-18038415,18038502-18038579,
18039112-18039168,18039276-18039349,18039424-18039495,
18039609-18039670,18039861-18039962,18040378-18040490,
18040809-18040940,18041156-18041243,18041617-18041711,
18041793-18042023,18042567-18042680,18042765-18042866,
18043091-18043207,18043301-18044146
Length = 810
Score = 28.3 bits (60), Expect = 7.6
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -3
Query: 180 PAPAQDGEAVAPMAPKNRRPLRLKRITPPTRS 85
PA DG AVA K P++ KR + PT+S
Sbjct: 49 PAAEADGGAVAKPEEKPHSPVKPKRSSSPTKS 80
>02_02_0337 - 9096588-9096603,9096879-9097927
Length = 354
Score = 28.3 bits (60), Expect = 7.6
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = -1
Query: 683 IYTRLMRHGSWSHCDYRSCYSMSYKGGSHGVSQNRGNHSMGHQSRLRNNV 534
I T + S H DY C + S+G + R HQ+R NN+
Sbjct: 296 ICTGIQAQRSMKHSDYNFCNKIVQIPLSYGEDKPRSKKIYKHQNRNNNNI 345
>01_01_1018 -
8046819-8046876,8046995-8047212,8048099-8048177,
8048455-8048540,8048698-8048983,8049063-8049205,
8049308-8049508,8049626-8049754,8050463-8050738,
8050823-8051098,8051364-8052364,8052452-8052634,
8052865-8052937,8053205-8053313,8053622-8053785
Length = 1093
Score = 27.9 bits (59), Expect = 10.0
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -1
Query: 626 YSMSYKGGSHGVSQNRGNHSMGHQSRLRNNVNAC 525
++ ++G S S N NH M HQ N AC
Sbjct: 301 HTSDHEGFSREKSSNLSNHFMHHQQGFMTNYGAC 334
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,113,782
Number of Sequences: 37544
Number of extensions: 340127
Number of successful extensions: 1181
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1181
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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