Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_F21
         (803 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41168| Best HMM Match : Borrelia_orfA (HMM E-Value=0.77)            30   1.9  
SB_13743| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_56440| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.5  
SB_59073| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_23424| Best HMM Match : Ank (HMM E-Value=1.1e-16)                   29   5.8  

>SB_41168| Best HMM Match : Borrelia_orfA (HMM E-Value=0.77)
          Length = 738

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 16/32 (50%), Positives = 21/32 (65%)
 Frame = -3

Query: 357 QHGIDAIRRQVLQQERLSGRQARRQRALDGRR 262
           Q  +DAIR++  Q+ERL  R+  RQR L  RR
Sbjct: 239 QQRLDAIRKRRRQRERLLRRRRDRQRRLRQRR 270


>SB_13743| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 559

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 437 RNMCNSRVCKHRCGDGVAHDRRAAVDVNTGLMR 339
           R+ C  R C+H C    +H RR A D + G ++
Sbjct: 87  RHACR-RTCRHACRHACSHARRHATDTHAGTLQ 118


>SB_56440| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1142

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 21/67 (31%), Positives = 30/67 (44%)
 Frame = -3

Query: 324 LQQERLSGRQARRQRALDGRRDAPEP*LAGVERER**PPLYPGDDHGDPAPAQDGEAVAP 145
           L+   L+GR++     L+GR+  P P L G  +    PPL       +P P  +G    P
Sbjct: 243 LRSYPLNGRKSNPNPPLNGRKSNPNPPLNG-RKSNPNPPL--NGRKSNPNPPHNGRKSNP 299

Query: 144 MAPKNRR 124
             P N R
Sbjct: 300 NPPLNGR 306


>SB_59073| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 557

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
 Frame = -3

Query: 363 GCQHGIDA-IRRQVLQQERLSGRQARRQRA---LDGRRDAPE 250
           G   GID    +++ Q+  + GR+ RR R    LDG RD PE
Sbjct: 399 GLPEGIDIWTEKEMYQRVSIFGRRKRRTRGYRYLDGERDVPE 440


>SB_23424| Best HMM Match : Ank (HMM E-Value=1.1e-16)
          Length = 494

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
 Frame = +3

Query: 468 HFLKKRSVALVAPSAVSHQA-RVDVISKPTLVS 563
           + L++RSVA+ APSA  +   R+   S+PTL++
Sbjct: 347 NLLRRRSVAVTAPSAKPNTTRRMSTASRPTLMN 379


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,776,480
Number of Sequences: 59808
Number of extensions: 392882
Number of successful extensions: 1321
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1315
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2227723674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)