Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_F21
         (803 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g10290.1 68414.m01159 dynamin-like protein 6 (ADL6) identical...    30   1.6  
At1g35610.1 68414.m04421 DC1 domain-containing protein contains ...    29   2.7  
At3g49650.1 68416.m05426 kinesin motor protein-related several k...    29   3.6  
At3g13590.1 68416.m01711 DC1 domain-containing protein contains ...    28   6.3  

>At1g10290.1 68414.m01159 dynamin-like protein 6 (ADL6) identical to
           dynamin-like protein 6 (ADL6) [Arabidopsis thaliana]
           GI:6651399; contains Pfam profiles PF01031: Dynamin
           central region, PF00350: Dynamin family, PF02212:
           Dynamin GTPase effector domain, PF00169: PH domain
          Length = 914

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = -3

Query: 174 PAQDGEAVAPMAPKNRR--PLRLKRITPPTRS 85
           PAQ+G+A +P +  NRR  P RL    PPT S
Sbjct: 879 PAQNGDAASPGSGSNRRTTPNRLPPAPPPTGS 910


>At1g35610.1 68414.m04421 DC1 domain-containing protein contains
           Pfam protein PF03107 DC1 domain
          Length = 612

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -1

Query: 491 HRSFLQKVFVSKS*LSQDRNMCNSRVCKHRC 399
           HRS    +F+S S  S+D  +C  +VCK RC
Sbjct: 419 HRSHEHPIFISTSYNSKDEILC--KVCKKRC 447


>At3g49650.1 68416.m05426 kinesin motor protein-related several
           kinesin-like proteins
          Length = 813

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 18/46 (39%), Positives = 25/46 (54%)
 Frame = -3

Query: 357 QHGIDAIRRQVLQQERLSGRQARRQRALDGRRDAPEP*LAGVERER 220
           QH  DAI +Q  +++ +    +RRQ  LD  RD  E   AGV  +R
Sbjct: 440 QHLDDAIAKQATEKDVVEALSSRRQVILDNIRDNDE---AGVNYQR 482


>At3g13590.1 68416.m01711 DC1 domain-containing protein contains
           Pfam protein PF03107 DC1 domain
          Length = 513

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = -3

Query: 528 VLDGKQLKEQPEPQIVSSESVRVQELIE 445
           V DGK L+E+PEP+ + S+ V +  L+E
Sbjct: 192 VWDGKDLEEEPEPEEIDSQ-VDLAALVE 218


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,917,610
Number of Sequences: 28952
Number of extensions: 249264
Number of successful extensions: 742
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1824072800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)