Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_F20
(818 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyc... 275 6e-75
SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 30 0.34
SPAC12G12.10 |||WD repeat protein, human WDR21 family|Schizosacc... 28 1.4
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 27 3.2
SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces pombe... 27 4.2
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 26 5.6
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ... 26 5.6
SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15 |Schizosac... 26 7.4
SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1... 26 7.4
>SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 192
Score = 275 bits (674), Expect = 6e-75
Identities = 126/191 (65%), Positives = 156/191 (81%)
Frame = +1
Query: 97 LPLHLPKPAPQFKATAVVNGAFKDISLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSEKAD 276
+ L + KPAP FK TAVVNGAF++I L+DYKGK+V L FYPLDFTFVCPTEI+AFSE A
Sbjct: 1 MSLQIGKPAPDFKGTAVVNGAFEEIKLADYKGKWVFLGFYPLDFTFVCPTEIVAFSEAAS 60
Query: 277 EFRKIGCEVLGASTDSHFTHLAWINTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETG 456
+F + +V+ STDS ++HLA+INTPRK+GGLG +NIPL++D SH++SRDYGVL E+ G
Sbjct: 61 KFAERNAQVILTSTDSEYSHLAFINTPRKEGGLGGINIPLLADPSHKVSRDYGVLIEDAG 120
Query: 457 IPFRGLFIIDDKQNLRQITINDLPVGRSVEETLRLVQAFQFTDKHGEVCPANWRPGAKTI 636
+ FRGLF+ID K LRQITINDLPVGRSV+E LRL+ AFQF ++HGEVCPANW G+ TI
Sbjct: 121 VAFRGLFLIDPKGVLRQITINDLPVGRSVDEALRLLDAFQFVEEHGEVCPANWHKGSDTI 180
Query: 637 KPDTKAAQEYF 669
DTK ++YF
Sbjct: 181 --DTKNPEKYF 189
>SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 198
Score = 30.3 bits (65), Expect = 0.34
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = -3
Query: 567 LHQPQGLLHRPPHGQVVDGDL-PEVLLVVDDEESSEGDARLLVQ 439
L Q Q L + ++ D DL PEV ++ +EES G++R L++
Sbjct: 115 LQQQQLLAEKDEENEIADNDLEPEVYDILYEEESKLGESRDLIR 158
>SPAC12G12.10 |||WD repeat protein, human WDR21
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 420
Score = 28.3 bits (60), Expect = 1.4
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +1
Query: 493 QNLRQITINDLPVGRSVEET--LRLVQAFQFTDKHGEVCPANWRPGAKTIKPDTKAAQE 663
+NL++I + LPVG +++ LR V T K+G++ P K+ + K E
Sbjct: 92 KNLKKINLRQLPVGTELQKIGWLREVNTIILTSKNGDILGCCLTPEDKSGVANEKYTSE 150
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 27.1 bits (57), Expect = 3.2
Identities = 16/60 (26%), Positives = 32/60 (53%)
Frame = -1
Query: 308 PSTSQPILRNSSAFSENAIISVGHTNVKSKG*KNSTTYFPL*SDREMSLNAPLTTAVALN 129
P TS +L +S+ + + +++ T + S N T P+ S ++ + P+T++ ALN
Sbjct: 1247 PITSSSVLNSSTPITSSTVVN-SSTPITSSTALN--TSIPITSSSVLNSSTPITSSTALN 1303
>SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 195
Score = 26.6 bits (56), Expect = 4.2
Identities = 26/88 (29%), Positives = 36/88 (40%), Gaps = 13/88 (14%)
Frame = +1
Query: 100 PLHLPKPAPQ--FKATAVVNGAFKDISLSDYKG-----------KYVVLFFYPLDFTFVC 240
P+ L KPA +T V DI+L D G K +V+F YP T C
Sbjct: 30 PVMLKKPAKDESVDSTIQVGDVIPDITLPDEDGTSIRLRDITANKGLVIFAYPKASTPGC 89
Query: 241 PTEIIAFSEKADEFRKIGCEVLGASTDS 324
+ F + + + EVLG S D+
Sbjct: 90 TKQGCGFRDNYPKIQASDYEVLGLSFDT 117
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 26.2 bits (55), Expect = 5.6
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +3
Query: 360 QAGRTRSHEHSSDKRQVAPHLSRLRSAGRGDGHPLPRTLHHRRQAEPQADHHQRP 524
+A R+ H H + + H R S G H +LH QA+P A ++P
Sbjct: 448 KAVRSARHRHYASLDEQGLHSLRNLSKTSGMNHSADFSLHEFGQADPFAYEIEKP 502
>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1026
Score = 26.2 bits (55), Expect = 5.6
Identities = 19/51 (37%), Positives = 23/51 (45%)
Frame = +1
Query: 97 LPLHLPKPAPQFKATAVVNGAFKDISLSDYKGKYVVLFFYPLDFTFVCPTE 249
L LH P P F+ + +G F S + K K V L YP TF TE
Sbjct: 265 LKLH-QSPEPHFELISKYSGDFPWKSCTILKSKPVSLCVYPEKITFNWLTE 314
>SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 265
Score = 25.8 bits (54), Expect = 7.4
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = -3
Query: 282 ELVRLLRERDNLRRAHEREVQRIEEQHNIFPLVVRQRNV 166
E +LLRE +N+++ +RE EE++ R+R +
Sbjct: 166 ETQQLLRELENIKQERKREQMLQEEKNRALEQEKREREI 204
>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
Prw1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 431
Score = 25.8 bits (54), Expect = 7.4
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -1
Query: 629 LAPGLQLAGHTSPCLSVNW 573
L P +L HT PC SV W
Sbjct: 174 LKPKYRLTKHTQPCTSVCW 192
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,589,446
Number of Sequences: 5004
Number of extensions: 48500
Number of successful extensions: 146
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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