Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_F20
(818 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_14608| Best HMM Match : AhpC-TSA (HMM E-Value=0) 278 4e-75
SB_29430| Best HMM Match : AhpC-TSA (HMM E-Value=0.00012) 158 4e-39
SB_22073| Best HMM Match : No HMM Matches (HMM E-Value=.) 124 7e-29
SB_35139| Best HMM Match : No HMM Matches (HMM E-Value=.) 80 2e-15
SB_33971| Best HMM Match : AhpC-TSA (HMM E-Value=2e-06) 46 3e-05
SB_34154| Best HMM Match : UvrD-helicase (HMM E-Value=0.064) 31 1.1
SB_35926| Best HMM Match : Bac_DNA_binding (HMM E-Value=7.5) 29 3.4
SB_50655| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_5829| Best HMM Match : S4 (HMM E-Value=4.2) 29 4.5
SB_49880| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.0
SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.0
SB_58507| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.0
SB_50564| Best HMM Match : Allexi_40kDa (HMM E-Value=4.3) 28 7.9
>SB_14608| Best HMM Match : AhpC-TSA (HMM E-Value=0)
Length = 265
Score = 278 bits (681), Expect = 4e-75
Identities = 126/176 (71%), Positives = 147/176 (83%), Gaps = 1/176 (0%)
Frame = +1
Query: 109 LPKPAPQFKATAV-VNGAFKDISLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSEKADEFR 285
+ KPAP F TAV +G F D+ LSDYKGKYVVLFFYPLDFTFVCPTEIIAFS++ DEF+
Sbjct: 53 IQKPAPAFSGTAVNKHGEFIDLKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRVDEFK 112
Query: 286 KIGCEVLGASTDSHFTHLAWINTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETGIPF 465
I CEV+ S DS ++HLAW N PRK+GG+G +NIP++SD + +IS+DYGVL E+ G+
Sbjct: 113 AINCEVIACSVDSEYSHLAWTNVPRKKGGIGNINIPILSDLTKQISKDYGVLLEDQGVAL 172
Query: 466 RGLFIIDDKQNLRQITINDLPVGRSVEETLRLVQAFQFTDKHGEVCPANWRPGAKT 633
RGLFIIDDK LRQITINDLPVGRSV+ETLRL+QAFQFTDKHGEVCPA WRPGA T
Sbjct: 173 RGLFIIDDKGILRQITINDLPVGRSVDETLRLIQAFQFTDKHGEVCPAGWRPGADT 228
>SB_29430| Best HMM Match : AhpC-TSA (HMM E-Value=0.00012)
Length = 704
Score = 158 bits (384), Expect = 4e-39
Identities = 71/95 (74%), Positives = 83/95 (87%)
Frame = +1
Query: 349 NTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETGIPFRGLFIIDDKQNLRQITINDLP 528
N PRK+GG+G +NIP++SD + +IS+DYGVL E+ G+ RGLFIIDDK LRQITINDLP
Sbjct: 3 NVPRKKGGIGNINIPILSDLTKQISKDYGVLLEDQGVALRGLFIIDDKGILRQITINDLP 62
Query: 529 VGRSVEETLRLVQAFQFTDKHGEVCPANWRPGAKT 633
VGRSV+ETLRL+QAFQFTDKHGEVCPA WRPGA T
Sbjct: 63 VGRSVDETLRLIQAFQFTDKHGEVCPAGWRPGADT 97
>SB_22073| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 237
Score = 124 bits (300), Expect = 7e-29
Identities = 54/79 (68%), Positives = 66/79 (83%)
Frame = +1
Query: 109 LPKPAPQFKATAVVNGAFKDISLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSEKADEFRK 288
+ KPAP ++ TAVVNG FK++ LSD++GKY+V FFYPLDFTFVCPTEIIAFS++ +EFR
Sbjct: 56 ISKPAPFWEGTAVVNGEFKELKLSDFEGKYLVFFFYPLDFTFVCPTEIIAFSDRIEEFRA 115
Query: 289 IGCEVLGASTDSHFTHLAW 345
I EV+G S DS FTHLAW
Sbjct: 116 INTEVVGCSVDSVFTHLAW 134
Score = 77.4 bits (182), Expect = 1e-14
Identities = 36/41 (87%), Positives = 39/41 (95%)
Frame = +1
Query: 469 GLFIIDDKQNLRQITINDLPVGRSVEETLRLVQAFQFTDKH 591
GLFIIDDK LRQIT+NDLPVGRSV+ETLRLVQAFQ+TDKH
Sbjct: 135 GLFIIDDKGVLRQITMNDLPVGRSVDETLRLVQAFQYTDKH 175
>SB_35139| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 56
Score = 79.8 bits (188), Expect = 2e-15
Identities = 34/47 (72%), Positives = 39/47 (82%)
Frame = +1
Query: 529 VGRSVEETLRLVQAFQFTDKHGEVCPANWRPGAKTIKPDTKAAQEYF 669
VGRSV+ETLRLVQAFQ+TDKHGEVCPA W+PG TI PD ++YF
Sbjct: 1 VGRSVDETLRLVQAFQYTDKHGEVCPAGWKPGKDTIIPDPTQKKKYF 47
>SB_33971| Best HMM Match : AhpC-TSA (HMM E-Value=2e-06)
Length = 160
Score = 46.4 bits (105), Expect = 3e-05
Identities = 32/131 (24%), Positives = 56/131 (42%), Gaps = 12/131 (9%)
Frame = +1
Query: 307 GASTDSHFTHLAWINTPRKQG-----GLGPMNIPLISDKSHRISRDYGVLD----EETGI 459
G S D +H W+ K N P+I+D+ ++ G++D + G+
Sbjct: 3 GLSCDDAESHRGWVKDITKYNLEQNKSSAKFNYPIIADERRELAVKLGMVDPDEKDSKGL 62
Query: 460 PF--RGLFIIDDKQNLRQITINDLPVGRSVEETLRLVQAFQFTDKHGEVCPANWRPGAK- 630
P R +FII + L+ + GR+ +E LR++ + Q T P +W+ G
Sbjct: 63 PLTCRAVFIIGPDKKLKLSILYPATTGRNFDEILRVIDSLQLTATKKVATPVDWKLGGDC 122
Query: 631 TIKPDTKAAQE 663
+ P K +E
Sbjct: 123 MVIPSIKPEEE 133
>SB_34154| Best HMM Match : UvrD-helicase (HMM E-Value=0.064)
Length = 1064
Score = 31.1 bits (67), Expect = 1.1
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Frame = +1
Query: 397 ISDKSHRISRDYGVLDEETGIPFRGLFIIDDKQNLRQITINDLPVGR-SVEE--TLRLVQ 567
+ DKS R + LD+ GI G ++ + N+ +ITIN+ + ++ TL V
Sbjct: 137 VQDKSG--IRIFSDLDDAHGIIDFGKRLLTEDTNIIEITINNTSTTQVKIKRFSTLEEVP 194
Query: 568 AFQFTDKHG 594
F F+DKHG
Sbjct: 195 EFSFSDKHG 203
>SB_35926| Best HMM Match : Bac_DNA_binding (HMM E-Value=7.5)
Length = 380
Score = 29.5 bits (63), Expect = 3.4
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 576 VHGQARRGVPRQLEARRQDHQARHQGRAGVLRRRQ 680
VH + R+G +L + + R QG+A VLR RQ
Sbjct: 262 VHPRPRQGTDVRLPLQLHQREVRRQGKATVLRYRQ 296
>SB_50655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2033
Score = 29.1 bits (62), Expect = 4.5
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = -3
Query: 198 IFPLVVRQRNVLERSVDDGRGLELGSGFGQMQRQIVETKDF*XRDENRKHR 46
I+P+VV+ N+L R+V +L S ++QR I + F R +N + R
Sbjct: 1618 IYPVVVKTGNILPRNVVKPTMAKLSSSAPELQRYICKVNIF-LRTKNSRSR 1667
>SB_5829| Best HMM Match : S4 (HMM E-Value=4.2)
Length = 893
Score = 29.1 bits (62), Expect = 4.5
Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = -3
Query: 528 GQVVDGDLPEVLLVVDD-EESSEGDARLLVQHSVVARDAVRLVAYQRNVHGTESAL 364
G++ D + L ++ + ++EG+A+ H+V R+ + + Y R + GT+S L
Sbjct: 336 GKLTDESMDSFLSELEKVDTTAEGEAQRYFDHAVTLRNTILFLRYNRTL-GTDSTL 390
>SB_49880| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 356
Score = 28.7 bits (61), Expect = 6.0
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +3
Query: 591 RRGVPRQLEARRQDHQARHQGRAGVLRR 674
RR +PR LE +RQ Q R R +LRR
Sbjct: 299 RRRIPRLLEQQRQIRQQRLPERLAILRR 326
>SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2848
Score = 28.7 bits (61), Expect = 6.0
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -3
Query: 282 ELVRLLRERDNLRRAHEREVQRIE 211
E++RL RERD RR E E +RI+
Sbjct: 1545 EVIRLQRERDEERRRREDEEKRIQ 1568
>SB_58507| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2353
Score = 28.7 bits (61), Expect = 6.0
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = -3
Query: 504 PEVLLVVDDEESSEGDARLLVQHSVVARDAVRLVAYQRNVHGTESAL 364
P+VL+V D E +LL H V R + Y R + SAL
Sbjct: 464 PKVLMVDDGTEFKGATTKLLTDHGVEIRGFFTVADYDRGLVAMASAL 510
>SB_50564| Best HMM Match : Allexi_40kDa (HMM E-Value=4.3)
Length = 290
Score = 28.3 bits (60), Expect = 7.9
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = -3
Query: 300 LAADLAELVRLLRERDNLRRAHEREVQRIEEQHNIFPLVVRQRNVLERSV 151
LA LA + L ER+N +R REV + ++H F + R V R +
Sbjct: 48 LANQLANIGDELTERNNYKRRLAREVGLMAKRHEFFNVPSRPAGVPTRHI 97
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,752,650
Number of Sequences: 59808
Number of extensions: 417334
Number of successful extensions: 1590
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1576
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2287608719
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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