Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_F17
         (498 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.0  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   4.1  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   4.1  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   9.4  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 293  HLSDVINVYSIPYYFVSSCDCK 358
            H  D+ N+Y++P    S+CD K
Sbjct: 1469 HYPDLHNLYAVPTDKKSACDSK 1490


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +1

Query: 217 NGK-LYNIKDNLIMNCSFTLSLEP 285
           NG  LY+I+ +L ++C   L L P
Sbjct: 145 NGSVLYSIRISLTLSCPMNLKLYP 168


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +1

Query: 217 NGK-LYNIKDNLIMNCSFTLSLEP 285
           NG  LY+I+ +L ++C   L L P
Sbjct: 145 NGSVLYSIRISLTLSCPMNLKLYP 168


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +1

Query: 238 KDNLIMNCSFTLSLEPETAFKRCDK 312
           +DN ++N   TL+ EP+   K  +K
Sbjct: 130 RDNHLVNAFKTLTQEPKNTNKFLEK 154


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,846
Number of Sequences: 438
Number of extensions: 1856
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)