Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_F15
         (828 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    32   0.006
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    24   2.0  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    24   2.0  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    24   2.0  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   6.0  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   8.0  

>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
            protein.
          Length = 1010

 Score = 32.3 bits (70), Expect = 0.006
 Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
 Frame = -1

Query: 750  HLXEPHEPHTEAXXSSPVLPQRRQEVLDLLKHQPIYRLLQTEGVRFLRSLQ-TEGVRFLR 574
            H    H  H  +  SS    Q++Q VL  L  Q + + +Q  GV+  + +Q  +GV+ ++
Sbjct: 806  HQQSHHGLHINSSPSSVQSGQQQQSVLQGLGVQGVQQGVQ--GVQTAQGVQGVQGVQGVQ 863

Query: 573  SLQGSQGVLRTMQLLQ-VQSV 514
             +QG QGV     LLQ VQ V
Sbjct: 864  GVQGVQGVQGVPGLLQGVQQV 884


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 325 LSISTLSGLVLFFLMTLLAFPQPPIITSYIG 233
           LSIS L  L +FFL+ +   P   ++   +G
Sbjct: 278 LSISILISLHVFFLLVVEIIPPTSLVVPLLG 308


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 325 LSISTLSGLVLFFLMTLLAFPQPPIITSYIG 233
           LSIS L  L +FFL+ +   P   ++   +G
Sbjct: 278 LSISILISLHVFFLLVVEIIPPTSLVVPLLG 308


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 325 LSISTLSGLVLFFLMTLLAFPQPPIITSYIG 233
           LSIS L  L +FFL+     P   ++   +G
Sbjct: 274 LSISILLSLTVFFLLLAEIIPPTSLVVPLLG 304


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -3

Query: 325 LSISTLSGLVLFFLMTLLAFPQPPIITSYIG 233
           LSIS L  L +FFL+     P   +    +G
Sbjct: 270 LSISILLSLTVFFLLLAEIIPPTSLTVPLLG 300


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -2

Query: 404  LASSGDNAAIPTNPKTTIFPSVK 336
            +ASS  N    T   TTI P VK
Sbjct: 949  VASSASNVTNVTTNLTTILPPVK 971


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,065
Number of Sequences: 438
Number of extensions: 4798
Number of successful extensions: 19
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26460186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)