Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_F14
         (864 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q00023 Cluster: Cellulose-growth-specific protein precu...    36   1.7  
UniRef50_Q9EMM2 Cluster: AMV179; n=1; Amsacta moorei entomopoxvi...    35   3.1  
UniRef50_Q80Z21 Cluster: Secreted gel-forming mucin; n=9; Tetrap...    35   3.1  
UniRef50_P24928 Cluster: DNA-directed RNA polymerase II subunit ...    35   3.1  
UniRef50_UPI0000D567EB Cluster: PREDICTED: similar to salvador h...    34   4.0  
UniRef50_A0YMU1 Cluster: Penicillin-binding protein 1A; n=2; Osc...    34   4.0  
UniRef50_Q749E4 Cluster: Radical SAM domain protein; n=6; Desulf...    33   7.1  
UniRef50_Q54ZK3 Cluster: Putative uncharacterized protein; n=3; ...    33   9.3  
UniRef50_Q54ZK0 Cluster: Putative uncharacterized protein; n=7; ...    33   9.3  
UniRef50_A7SCH3 Cluster: Predicted protein; n=1; Nematostella ve...    33   9.3  
UniRef50_Q6CI17 Cluster: Similarity; n=1; Yarrowia lipolytica|Re...    33   9.3  
UniRef50_Q55P80 Cluster: Putative uncharacterized protein; n=2; ...    33   9.3  
UniRef50_Q89745 Cluster: Protein Tat; n=171; Primate lentivirus ...    33   9.3  

>UniRef50_Q00023 Cluster: Cellulose-growth-specific protein
           precursor; n=1; Agaricus bisporus|Rep:
           Cellulose-growth-specific protein precursor - Agaricus
           bisporus (Common mushroom)
          Length = 320

 Score = 35.5 bits (78), Expect = 1.7
 Identities = 22/57 (38%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
 Frame = +3

Query: 573 YAKPASPTYQNTSSFHSEKMTPHKYTSTVQSNYSTHTPGY--NVGQSPGYGRTGGRG 737
           Y  P  P Y +  +  S   TPH  T    S   T TPG     GQ  G G TGG G
Sbjct: 246 YIVPGPPLYGSGGNGGSPTTTPHTTTPITTSPPPTSTPGTIPQYGQCGGIGWTGGTG 302


>UniRef50_Q9EMM2 Cluster: AMV179; n=1; Amsacta moorei entomopoxvirus
           'L'|Rep: AMV179 - Amsacta moorei entomopoxvirus (AmEPV)
          Length = 416

 Score = 34.7 bits (76), Expect = 3.1
 Identities = 16/58 (27%), Positives = 32/58 (55%)
 Frame = +3

Query: 6   VFMLFSCVSRHKRTVARAFTKLGDKFKYRISNIPIKFSVFRITFDSNRNFKLKKTVLT 179
           ++M++ C+  HK+          D+    +S I I +++F I +D N+ +K+KK  L+
Sbjct: 237 LYMIYKCIKIHKKNKIWPLCLSKDQDTIALSIINIPYNIFNIVYD-NKLYKIKKNSLS 293


>UniRef50_Q80Z21 Cluster: Secreted gel-forming mucin; n=9;
            Tetrapoda|Rep: Secreted gel-forming mucin - Mus musculus
            (Mouse)
          Length = 1726

 Score = 34.7 bits (76), Expect = 3.1
 Identities = 17/35 (48%), Positives = 20/35 (57%)
 Frame = +3

Query: 603  NTSSFHSEKMTPHKYTSTVQSNYSTHTPGYNVGQS 707
            NT+S      T H Y+STV S  STHTPG +   S
Sbjct: 1506 NTTSSVPVTSTEHPYSSTVTSGSSTHTPGLSPSSS 1540


>UniRef50_P24928 Cluster: DNA-directed RNA polymerase II subunit RPB1;
            n=473; cellular organisms|Rep: DNA-directed RNA
            polymerase II subunit RPB1 - Homo sapiens (Human)
          Length = 1970

 Score = 34.7 bits (76), Expect = 3.1
 Identities = 20/48 (41%), Positives = 24/48 (50%)
 Frame = +3

Query: 582  PASPTYQNTSSFHSEKMTPHKYTSTVQSNYSTHTPGYNVGQSPGYGRT 725
            P SPTY  TS  +S     +  TS   S YS  +PGY+   SP Y  T
Sbjct: 1911 PTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYS-PTSPTYSLT 1957


>UniRef50_UPI0000D567EB Cluster: PREDICTED: similar to salvador
           homolog 1; n=1; Tribolium castaneum|Rep: PREDICTED:
           similar to salvador homolog 1 - Tribolium castaneum
          Length = 404

 Score = 34.3 bits (75), Expect = 4.0
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +3

Query: 567 SDYAKPASPTYQNTSSFHSEKMTPHKYTSTVQSNYSTHTPGYNVGQS 707
           ++Y   +SP YQNT   H  + T   Y++T    YS    G   G+S
Sbjct: 155 NNYNSRSSPIYQNTDGAHKSQDTTPIYSNTGAERYSNPLQGMTYGES 201


>UniRef50_A0YMU1 Cluster: Penicillin-binding protein 1A; n=2;
           Oscillatoriales|Rep: Penicillin-binding protein 1A -
           Lyngbya sp. PCC 8106
          Length = 855

 Score = 34.3 bits (75), Expect = 4.0
 Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
 Frame = +3

Query: 576 AKPASPTYQNTSSFHSEKMTP--HKYTS-TVQSNYSTHTPGYNVGQSPGYGRTGG--RGN 740
           AKP  P    T S   +K  P  H++ S T ++NY++ +  YN G S GYG +GG   G 
Sbjct: 766 AKPHQPNSIVTGSSAVQKDDPDYHRFFSNTNKTNYNSRS--YNDGYSGGYGYSGGYSSGG 823

Query: 741 XXXXXXXXXXXSSARYG 791
                      SS  YG
Sbjct: 824 YSSGGYSSGGYSSGGYG 840


>UniRef50_Q749E4 Cluster: Radical SAM domain protein; n=6;
           Desulfuromonadales|Rep: Radical SAM domain protein -
           Geobacter sulfurreducens
          Length = 290

 Score = 33.5 bits (73), Expect = 7.1
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = -1

Query: 759 GCPARSGSLDHRSCRSLAIVPRCNRACGYCS 667
           G P   G+        LA+ PRCN  CGYCS
Sbjct: 13  GHPCFGGNHHKNGRMHLAVAPRCNIKCGYCS 43


>UniRef50_Q54ZK3 Cluster: Putative uncharacterized protein; n=3;
           Dictyostelium discoideum|Rep: Putative uncharacterized
           protein - Dictyostelium discoideum AX4
          Length = 1100

 Score = 33.1 bits (72), Expect = 9.3
 Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -1

Query: 693 CNRACGYCSCFGRYS-YICAESSSLSG 616
           CN   GYC+C GR+S Y C+  S+ SG
Sbjct: 786 CNTTTGYCNCIGRWSGYDCSLYSNPSG 812


>UniRef50_Q54ZK0 Cluster: Putative uncharacterized protein; n=7;
           Dictyostelium discoideum|Rep: Putative uncharacterized
           protein - Dictyostelium discoideum AX4
          Length = 1113

 Score = 33.1 bits (72), Expect = 9.3
 Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -1

Query: 693 CNRACGYCSCFGRYS-YICAESSSLSG 616
           CN   GYC+C GR+S Y C+  S+ SG
Sbjct: 780 CNTTTGYCNCIGRWSGYDCSLYSNPSG 806


>UniRef50_A7SCH3 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 524

 Score = 33.1 bits (72), Expect = 9.3
 Identities = 17/40 (42%), Positives = 20/40 (50%)
 Frame = +1

Query: 664 ATTVPTRPVTTWDNRQATAGPVVEGT*XSWTPYSTT*AVP 783
           ATT  T P TT +   AT   +   T    TP +TT AVP
Sbjct: 269 ATTAETTPATTAETTPATTAEITPATTAETTPATTTAAVP 308


>UniRef50_Q6CI17 Cluster: Similarity; n=1; Yarrowia lipolytica|Rep:
           Similarity - Yarrowia lipolytica (Candida lipolytica)
          Length = 269

 Score = 33.1 bits (72), Expect = 9.3
 Identities = 22/98 (22%), Positives = 40/98 (40%), Gaps = 1/98 (1%)
 Frame = +3

Query: 549 GSRNISSDYAKPASPTYQNTSSFHSEKMTPHKYTSTVQSNYSTHTP-GYNVGQSPGYGRT 725
           G+ N +S+Y   ++  Y N S+ +S       Y S   SN+  +   G N   +  YG  
Sbjct: 89  GNSNSNSNYGNNSNSNYGNNSNSNSNS----SYGSNSNSNHGGNDSYGNNSNSNSNYGNN 144

Query: 726 GGRGNXXXXXXXXXXXSSARYGNYAXKTSFTERSVNDS 839
               +           S++ YGN +  ++    S ++S
Sbjct: 145 SNSNSNSNSNYGNNSNSNSNYGNNSNNSNSNSNSNSNS 182


>UniRef50_Q55P80 Cluster: Putative uncharacterized protein; n=2;
           Filobasidiella neoformans|Rep: Putative uncharacterized
           protein - Cryptococcus neoformans (Filobasidiella
           neoformans)
          Length = 603

 Score = 33.1 bits (72), Expect = 9.3
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
 Frame = +3

Query: 552 SRNISSDYAKPASPTYQNTSSFHSEKMTPHKYTS-----TVQSNYSTHTPGYNVGQSPGY 716
           +R+  S  + PA+P    TSS + ++ TP  Y++     T  SN    + G  VG   G 
Sbjct: 11  NRSTPSTLSTPATPVQSTTSSNNGDRSTPLTYSNGNANRTPSSNTRWSSNGSGVGHGSGI 70

Query: 717 GRTGG 731
           G   G
Sbjct: 71  GHKNG 75


>UniRef50_Q89745 Cluster: Protein Tat; n=171; Primate lentivirus
           group|Rep: Protein Tat - Human immunodeficiency virus
           type 2 (isolate EHO subtype B) (HIV-2)
          Length = 138

 Score = 33.1 bits (72), Expect = 9.3
 Identities = 22/71 (30%), Positives = 33/71 (46%)
 Frame = -1

Query: 795 NSRSGHCSSRRVGCPARSGSLDHRSCRSLAIVPRCNRACGYCSCFGRYSYICAESSSLSG 616
           NS SGH SS   G  A +  LD+R    L+ + R  +AC       + SY C       G
Sbjct: 13  NSSSGHSSSTSEGV-ANTQGLDNRGEEILSQLYRPLKACSNTCYCKKCSYHCQLCFLKKG 71

Query: 615 MSLCFGKLAKQ 583
           + +C+ +  K+
Sbjct: 72  LGICYERSRKR 82


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 747,010,633
Number of Sequences: 1657284
Number of extensions: 14357754
Number of successful extensions: 45110
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 42595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44999
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 76652910257
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)