Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_F14
(864 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 29 0.64
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce... 28 1.5
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 28 1.5
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|... 28 2.0
SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component Sec9|Sc... 27 2.6
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 26 6.0
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb... 26 6.0
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce... 26 6.0
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 26 6.0
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 7.9
>SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 527
Score = 29.5 bits (63), Expect = 0.64
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = +3
Query: 87 YRISNIPIKFSVFRITFDSNRNFKLKKTVLTCFSKICVISRECQDIIEMSNTHYFVND 260
Y I P+ SVF + NFK++K V T I C + + NT + +ND
Sbjct: 351 YIIGLAPLSQSVFDSQASTGFNFKIQKRVETELDMFWYIVANCTTGLAVVNTDFPLND 408
>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 28.3 bits (60), Expect = 1.5
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 582 PASPTYQNTSSFHSEKMTPH 641
PA+P+ QN+ S H +M PH
Sbjct: 460 PAAPSIQNSLSVHESEMPPH 479
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 28.3 bits (60), Expect = 1.5
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = +3
Query: 582 PASPTYQNTSSFHSEKMTPHKYTSTVQSNYSTHTPGYNVGQSPGYGRT 725
P+SP+Y TS +S T Y+ T S YS +P Y+ SP Y T
Sbjct: 1573 PSSPSYSPTSPSYSP--TSPSYSPTSPS-YSPTSPSYS-ATSPSYSPT 1616
>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
Prp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 906
Score = 27.9 bits (59), Expect = 2.0
Identities = 14/55 (25%), Positives = 30/55 (54%)
Frame = +3
Query: 3 VVFMLFSCVSRHKRTVARAFTKLGDKFKYRISNIPIKFSVFRITFDSNRNFKLKK 167
++++L++ ++ +A A LG F+Y ++ I + RI F +N N + +K
Sbjct: 579 ILWLLYAKERKNVNDIAGARNILGRAFEYNSNSEEIWLAAVRIEFVNNENERARK 633
>SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component
Sec9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 419
Score = 27.5 bits (58), Expect = 2.6
Identities = 19/76 (25%), Positives = 28/76 (36%), Gaps = 1/76 (1%)
Frame = +3
Query: 588 SPTYQNTSSFHSEKMTPHKYTSTVQSNYSTHTPGYNVGQSPG-YGRTGGRGNXXXXXXXX 764
S T N S+ T + Y+S ++ + Y + G YG + G+
Sbjct: 24 SNTATNAPSYSVGGTTANSYSSNSYNDNNNSNSTYGSSNNYGNYGSSNNYGSYGASNTYG 83
Query: 765 XXXSSARYGNYAXKTS 812
SS YGNY S
Sbjct: 84 SNGSSNNYGNYGATNS 99
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 26.2 bits (55), Expect = 6.0
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +3
Query: 633 TPHKYTSTVQSNYSTHTPGYNVG 701
+P T + S+YST TP +++G
Sbjct: 535 SPSSSTKSASSSYSTTTPAFSIG 557
>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 224
Score = 26.2 bits (55), Expect = 6.0
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Frame = +3
Query: 546 NGSRNISSDYA-KPASPTYQNTSSFHSEKMTPHKYTSTVQSNYSTHTPGYNVGQ 704
+GS N S PA PT Q +S+ + + SNY+T P Y Q
Sbjct: 61 SGSGNAYSQAPYPPARPTSQRPNSWQPGNASTMYASPPPSSNYNTAKPPYQTSQ 114
>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 817
Score = 26.2 bits (55), Expect = 6.0
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = +3
Query: 60 FTKLGDKFKYRISNIPIKFSVFRITFDSNRNFKLKKTVLTCFSKICVISRECQDIIEMSN 239
F+ +KY +IP+ + R + S+RN + L K+C S ++II SN
Sbjct: 609 FSYSSKMYKYDRVSIPV---ITRAS--SSRNLLITMNCLRVLEKVCKYSNIRKEIIARSN 663
Query: 240 TH 245
H
Sbjct: 664 LH 665
>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 764
Score = 26.2 bits (55), Expect = 6.0
Identities = 14/55 (25%), Positives = 25/55 (45%)
Frame = +3
Query: 543 INGSRNISSDYAKPASPTYQNTSSFHSEKMTPHKYTSTVQSNYSTHTPGYNVGQS 707
I+ N Y KP +P Y+ TS + ++ + + ++ +T TP G S
Sbjct: 480 IDDKWNRKVQYIKPVAPPYRQTSCYITDTIQHLDINNYIEILSTTSTPDVPSGTS 534
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.8 bits (54), Expect = 7.9
Identities = 16/44 (36%), Positives = 27/44 (61%)
Frame = +3
Query: 546 NGSRNISSDYAKPASPTYQNTSSFHSEKMTPHKYTSTVQSNYST 677
+ S ISS + P+S ++ +T+S S K + ++STV S+ ST
Sbjct: 338 SSSSTISSSSSSPSSSSFSSTTS--SSKSSS-SFSSTVSSSSST 378
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,082,914
Number of Sequences: 5004
Number of extensions: 59318
Number of successful extensions: 193
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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