Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_F14
         (864 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_04_0019 - 15134494-15135863,15135966-15136083,15136226-151362...    30   2.7  
04_01_0385 - 5095410-5095445,5095595-5095796,5095905-5095979,509...    29   3.6  
11_06_0542 + 24777453-24777632,24777654-24778478,24778576-247793...    29   6.3  
07_03_0147 - 14437982-14438390,14438521-14438576                       29   6.3  
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287...    29   6.3  
04_04_1125 + 31085106-31085714                                         29   6.3  
05_03_0491 + 14682895-14683365,14684127-14684656,14684739-14685213     28   8.4  

>01_04_0019 -
           15134494-15135863,15135966-15136083,15136226-15136278,
           15136293-15137271,15138980-15139054
          Length = 864

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 17/30 (56%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +2

Query: 425 RRSHQFPGQNWVSSRQRHFTGPS-QLVRQP 511
           RR HQF  QN VS R  H  GPS  +VR P
Sbjct: 571 RRKHQFDVQNKVSLRWIHALGPSLGIVRVP 600


>04_01_0385 -
           5095410-5095445,5095595-5095796,5095905-5095979,
           5096460-5096484,5097032-5097137
          Length = 147

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -1

Query: 750 ARSGSLD-HRSCRSLAIVPRCNRACGYCSCFGRYSYICAES 631
           ARS S D HRSCR   +   C +   YC CF  Y Y C+++
Sbjct: 48  ARSMSNDQHRSCR--CVKSNCVKL--YCPCFSAYGY-CSQN 83


>11_06_0542 +
           24777453-24777632,24777654-24778478,24778576-24779319,
           24779422-24780354,24780456-24780938,24780969-24781082,
           24781240-24781636,24781732-24782024,24782392-24782802
          Length = 1459

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +1

Query: 586 LRQLTKTQAHSTQRR*LRTNIRVPSKATTVPTRPVTTWDNRQATAGP 726
           LR+L K +AH   +R LR ++ VP K ++       +W  +   A P
Sbjct: 119 LREL-KDRAHDVGQRRLRYDVEVPGKPSSKAAGGAASWSVQSEEASP 164


>07_03_0147 - 14437982-14438390,14438521-14438576
          Length = 154

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 21/62 (33%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
 Frame = +2

Query: 605 HKLIPLREDDSAQIYEYRPKQLQYPHARLQRGTIARLRQDRWSREPXRAGHP--TRRLEQ 778
           H+    REDD      YR         R   G  +R+ + RW RE  R G P    R EQ
Sbjct: 30  HRPFTAREDDELLRLHYRLGDRWKEIGRAVYGRTSRVMKHRW-RELRRGGFPAAATRKEQ 88

Query: 779 CP 784
            P
Sbjct: 89  AP 90


>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
            2879715-2879973,2880060-2880346,2880423-2880758,
            2880862-2881003,2881077-2881297,2881379-2881540,
            2881617-2881775,2881860-2882159,2882834-2883097,
            2883133-2883243,2883902-2883988
          Length = 1871

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 19/51 (37%), Positives = 24/51 (47%)
 Frame = +3

Query: 564  SSDYAKPASPTYQNTSSFHSEKMTPHKYTSTVQSNYSTHTPGYNVGQSPGY 716
            +S    P SP Y  TSS +S     +  TS   S YS  +P Y+   SP Y
Sbjct: 1672 TSPVYSPTSPVYNPTSSAYSPTSPSYNPTSPSYS-YSPTSPSYS-PTSPSY 1720


>04_04_1125 + 31085106-31085714
          Length = 202

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 22/65 (33%), Positives = 25/65 (38%), Gaps = 1/65 (1%)
 Frame = +1

Query: 655 PSKATTVPTRPVTTWDNRQATAGPVVEGT*XSWTPY-STT*AVPATGITXKKLRSPKDL* 831
           P+     PT P T W    AT  P    T   WTP  +T    PAT  T     +P    
Sbjct: 49  PTPTPATPTTPPTPWTPPPATPTP---PTPTPWTPTPATPPPTPATPATPTTPPTPAPAP 105

Query: 832 MTATG 846
            T TG
Sbjct: 106 STPTG 110


>05_03_0491 + 14682895-14683365,14684127-14684656,14684739-14685213
          Length = 491

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -1

Query: 426 RATWSCRWGC 397
           R  WSCRWGC
Sbjct: 457 RCAWSCRWGC 466


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,059,151
Number of Sequences: 37544
Number of extensions: 393559
Number of successful extensions: 1197
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1196
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)