Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_F14
         (864 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X74874-1|CAA52862.1| 1970|Homo sapiens RNA polymerase II largest...    35   0.44 
X63564-1|CAA45125.1| 1970|Homo sapiens RNA polymerase II largest...    35   0.44 
X71428-1|CAA50559.1|  525|Homo sapiens FUS gycline rich protein ...    33   1.0  
U36561-1|AAA79948.1|  528|Homo sapiens fus-like protein protein.       33   1.0  
AF071213-2|AAC35284.1|  525|Homo sapiens FUS/TLS protein protein.      33   1.0  
BC026062-1|AAH26062.1|  526|Homo sapiens fusion (involved in t(1...    32   3.1  

>X74874-1|CAA52862.1| 1970|Homo sapiens RNA polymerase II largest
            subunit protein.
          Length = 1970

 Score = 34.7 bits (76), Expect = 0.44
 Identities = 20/48 (41%), Positives = 24/48 (50%)
 Frame = +3

Query: 582  PASPTYQNTSSFHSEKMTPHKYTSTVQSNYSTHTPGYNVGQSPGYGRT 725
            P SPTY  TS  +S     +  TS   S YS  +PGY+   SP Y  T
Sbjct: 1911 PTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYS-PTSPTYSLT 1957


>X63564-1|CAA45125.1| 1970|Homo sapiens RNA polymerase II largest
            subunit protein.
          Length = 1970

 Score = 34.7 bits (76), Expect = 0.44
 Identities = 20/48 (41%), Positives = 24/48 (50%)
 Frame = +3

Query: 582  PASPTYQNTSSFHSEKMTPHKYTSTVQSNYSTHTPGYNVGQSPGYGRT 725
            P SPTY  TS  +S     +  TS   S YS  +PGY+   SP Y  T
Sbjct: 1911 PTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYS-PTSPTYSLT 1957


>X71428-1|CAA50559.1|  525|Homo sapiens FUS gycline rich protein
           protein.
          Length = 525

 Score = 33.5 bits (73), Expect = 1.0
 Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 2/93 (2%)
 Frame = +3

Query: 573 YAKPASPTY-QNTSSFHSEKMTPHKYTSTVQSNYSTHTPGYNVGQSP-GYGRTGGRGNXX 746
           Y++ +S  Y Q + S +S+      Y  +  S+Y      Y    +P GYG TGG G+  
Sbjct: 25  YSQQSSQPYGQQSYSGYSQSTDTSGYGQSSYSSYGQSQNSYGTQSTPQGYGSTGGYGSSQ 84

Query: 747 XXXXXXXXXSSARYGNYAXKTSFTERSVNDSYG 845
                    SS  Y  Y  + +    S + SYG
Sbjct: 85  SSQSSYGQQSS--YPGYGQQPA--PSSTSGSYG 113


>U36561-1|AAA79948.1|  528|Homo sapiens fus-like protein protein.
          Length = 528

 Score = 33.5 bits (73), Expect = 1.0
 Identities = 27/93 (29%), Positives = 38/93 (40%), Gaps = 2/93 (2%)
 Frame = +3

Query: 573 YAKPASPTYQNTSSFHSEKMTPHKYTSTVQSNYS-THTPGYNVGQSP-GYGRTGGRGNXX 746
           Y++ +S  Y   S     + T   Y  +  S+Y  +   GY    +P GYG TGG G+  
Sbjct: 25  YSQQSSQPYGQQSYSGYSQSTDTGYGQSSYSSYGQSQNTGYGTQSAPQGYGSTGGYGSSQ 84

Query: 747 XXXXXXXXXSSARYGNYAXKTSFTERSVNDSYG 845
                    SS  Y  Y  +   T  S + SYG
Sbjct: 85  SSQSSYGQQSS--YPGYGPQP--TPSSTSGSYG 113


>AF071213-2|AAC35284.1|  525|Homo sapiens FUS/TLS protein protein.
          Length = 525

 Score = 33.5 bits (73), Expect = 1.0
 Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 2/93 (2%)
 Frame = +3

Query: 573 YAKPASPTY-QNTSSFHSEKMTPHKYTSTVQSNYSTHTPGYNVGQSP-GYGRTGGRGNXX 746
           Y++ +S  Y Q + S +S+      Y  +  S+Y      Y    +P GYG TGG G+  
Sbjct: 25  YSQQSSQPYGQQSYSGYSQSTDTSGYGQSSYSSYGQSQNSYGTQSTPQGYGSTGGYGSSQ 84

Query: 747 XXXXXXXXXSSARYGNYAXKTSFTERSVNDSYG 845
                    SS  Y  Y  + +    S + SYG
Sbjct: 85  SSQSSYGQQSS--YPGYGQQPA--PSSTSGSYG 113


>BC026062-1|AAH26062.1|  526|Homo sapiens fusion (involved in
           t(12;16) in malignant liposarcoma) protein.
          Length = 526

 Score = 31.9 bits (69), Expect = 3.1
 Identities = 21/100 (21%), Positives = 39/100 (39%), Gaps = 5/100 (5%)
 Frame = +3

Query: 564 SSDYAKPASPTY-----QNTSSFHSEKMTPHKYTSTVQSNYSTHTPGYNVGQSPGYGRTG 728
           S+DY + A+ +Y     Q    +  +   PH   S    + ST T GY       YG++ 
Sbjct: 3   SNDYTQQATQSYGAYPTQPGQGYSQQSSQPHGQQSYSGYSQSTDTSGYGQSSYSSYGQSQ 62

Query: 729 GRGNXXXXXXXXXXXSSARYGNYAXKTSFTERSVNDSYGR 848
             G            +     + + ++S+ ++S    YG+
Sbjct: 63  NTGYGTQSTPQGYGSTGGYGSSQSSQSSYGQQSSYPGYGQ 102


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,595,312
Number of Sequences: 237096
Number of extensions: 2231675
Number of successful extensions: 5332
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5310
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 11039988564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)