Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_F14
(864 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist... 33 0.26
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele... 33 0.26
Z68752-9|CAA92985.1| 1208|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z68316-8|CAA92685.1| 1208|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z69790-3|CAD56579.1| 1234|Caenorhabditis elegans Hypothetical pr... 29 5.7
Z69790-2|CAA93653.2| 1271|Caenorhabditis elegans Hypothetical pr... 29 5.7
AF339882-1|AAK14396.1| 1329|Caenorhabditis elegans attractin pro... 29 5.7
U97005-13|AAB52290.1| 868|Caenorhabditis elegans Hypothetical p... 28 7.5
U97005-12|AAB52289.1| 1121|Caenorhabditis elegans Hypothetical p... 28 7.5
AC024777-5|AAF60564.1| 506|Caenorhabditis elegans Hypothetical ... 28 7.5
U88169-7|ABQ13064.1| 205|Caenorhabditis elegans Hypothetical pr... 28 9.9
U88169-6|AAB42236.2| 216|Caenorhabditis elegans Hypothetical pr... 28 9.9
AF040647-10|AAB94993.1| 124|Caenorhabditis elegans Hypothetical... 28 9.9
>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
protein 1 protein.
Length = 1852
Score = 33.1 bits (72), Expect = 0.26
Identities = 24/63 (38%), Positives = 30/63 (47%)
Frame = +3
Query: 549 GSRNISSDYAKPASPTYQNTSSFHSEKMTPHKYTSTVQSNYSTHTPGYNVGQSPGYGRTG 728
G + SS P+SPTY TS +S T +Y+ T YS +P Y SP Y T
Sbjct: 1714 GGYSPSSPKYSPSSPTYSPTSPSYSP--TSPQYSPT-SPQYSPSSPTY-TPSSPTYNPTS 1769
Query: 729 GRG 737
RG
Sbjct: 1770 PRG 1772
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = +3
Query: 555 RNISSDYAKPASPTYQNTSSFHSEKMTPHKYTSTVQSNYSTHTPGYNVGQSP 710
R SS P SPTY TS ++ + TS + + PG + SP
Sbjct: 1771 RGFSSPQYSPTSPTYSPTSPSYTPSSPQYSPTSPTYTPSPSEQPGTSAQYSP 1822
>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
RNA polymeraseII largest subunit (ama-1 IV) gene,
complete cds. ).
Length = 1859
Score = 33.1 bits (72), Expect = 0.26
Identities = 24/63 (38%), Positives = 30/63 (47%)
Frame = +3
Query: 549 GSRNISSDYAKPASPTYQNTSSFHSEKMTPHKYTSTVQSNYSTHTPGYNVGQSPGYGRTG 728
G + SS P+SPTY TS +S T +Y+ T YS +P Y SP Y T
Sbjct: 1721 GGYSPSSPKYSPSSPTYSPTSPSYSP--TSPQYSPT-SPQYSPSSPTY-TPSSPTYNPTS 1776
Query: 729 GRG 737
RG
Sbjct: 1777 PRG 1779
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = +3
Query: 555 RNISSDYAKPASPTYQNTSSFHSEKMTPHKYTSTVQSNYSTHTPGYNVGQSP 710
R SS P SPTY TS ++ + TS + + PG + SP
Sbjct: 1778 RGFSSPQYSPTSPTYSPTSPSYTPSSPQYSPTSPTYTPSPSEQPGTSAQYSP 1829
>Z68752-9|CAA92985.1| 1208|Caenorhabditis elegans Hypothetical protein
K08E4.1 protein.
Length = 1208
Score = 30.3 bits (65), Expect = 1.9
Identities = 30/107 (28%), Positives = 43/107 (40%), Gaps = 3/107 (2%)
Frame = +3
Query: 549 GSRNISSDYAKPASPTYQNTSSFHSEKMTPHKYTSTVQSNYSTHTPGYNVGQSPGY---G 719
GS SS Y+ +P + + TP T Y + TP Y+ G++P Y G
Sbjct: 787 GSGGGSSFYSSSKTPMRDSGKTPMYGSKTPMYGAQTPM--YGSMTPAYDGGRTPAYGEGG 844
Query: 720 RTGGRGNXXXXXXXXXXXSSARYGNYAXKTSFTERSVNDSYGRXNGA 860
RT G+ SS+R Y +S T +YG +GA
Sbjct: 845 RTPAYGSKTPAYGDLDEHSSSRTPAYGNDSSRT-----PAYGSADGA 886
>Z68316-8|CAA92685.1| 1208|Caenorhabditis elegans Hypothetical protein
K08E4.1 protein.
Length = 1208
Score = 30.3 bits (65), Expect = 1.9
Identities = 30/107 (28%), Positives = 43/107 (40%), Gaps = 3/107 (2%)
Frame = +3
Query: 549 GSRNISSDYAKPASPTYQNTSSFHSEKMTPHKYTSTVQSNYSTHTPGYNVGQSPGY---G 719
GS SS Y+ +P + + TP T Y + TP Y+ G++P Y G
Sbjct: 787 GSGGGSSFYSSSKTPMRDSGKTPMYGSKTPMYGAQTPM--YGSMTPAYDGGRTPAYGEGG 844
Query: 720 RTGGRGNXXXXXXXXXXXSSARYGNYAXKTSFTERSVNDSYGRXNGA 860
RT G+ SS+R Y +S T +YG +GA
Sbjct: 845 RTPAYGSKTPAYGDLDEHSSSRTPAYGNDSSRT-----PAYGSADGA 886
>Z69790-3|CAD56579.1| 1234|Caenorhabditis elegans Hypothetical protein
F33C8.1b protein.
Length = 1234
Score = 28.7 bits (61), Expect = 5.7
Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 5/113 (4%)
Frame = -1
Query: 744 SGSLDHRSCRSLAIVPRCNRACGYCSCFGRYSYICAESSSLSGMSLCF-GKLAKQVLHNP 568
SGS+ +R C++ ++V ++ CG C ++ +S +G+ LC G + P
Sbjct: 838 SGSVINRVCQAESVVCEEHKTCGECQRDPGCGWLADDSK--TGLGLCIRGTSTGPLEPKP 895
Query: 567 S*YXXXXXXXXXXXXWGNSGCLTS*DGPVKCLCLEETQFC----PGNWCDRRA 421
G+S C TS G + +E+ Q C G C+R A
Sbjct: 896 ENSTWYFIDCPACQCNGHSTCFTS-VGSFPPVTIEKCQSCQNHTTGAHCERCA 947
>Z69790-2|CAA93653.2| 1271|Caenorhabditis elegans Hypothetical protein
F33C8.1a protein.
Length = 1271
Score = 28.7 bits (61), Expect = 5.7
Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 5/113 (4%)
Frame = -1
Query: 744 SGSLDHRSCRSLAIVPRCNRACGYCSCFGRYSYICAESSSLSGMSLCF-GKLAKQVLHNP 568
SGS+ +R C++ ++V ++ CG C ++ +S +G+ LC G + P
Sbjct: 875 SGSVINRVCQAESVVCEEHKTCGECQRDPGCGWLADDSK--TGLGLCIRGTSTGPLEPKP 932
Query: 567 S*YXXXXXXXXXXXXWGNSGCLTS*DGPVKCLCLEETQFC----PGNWCDRRA 421
G+S C TS G + +E+ Q C G C+R A
Sbjct: 933 ENSTWYFIDCPACQCNGHSTCFTS-VGSFPPVTIEKCQSCQNHTTGAHCERCA 984
>AF339882-1|AAK14396.1| 1329|Caenorhabditis elegans attractin protein.
Length = 1329
Score = 28.7 bits (61), Expect = 5.7
Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 5/113 (4%)
Frame = -1
Query: 744 SGSLDHRSCRSLAIVPRCNRACGYCSCFGRYSYICAESSSLSGMSLCF-GKLAKQVLHNP 568
SGS+ +R C++ ++V ++ CG C ++ +S +G+ LC G + P
Sbjct: 875 SGSVINRVCQAESVVCEEHKTCGECQRDPGCGWLADDSK--TGLGLCIRGTSTGPLEPKP 932
Query: 567 S*YXXXXXXXXXXXXWGNSGCLTS*DGPVKCLCLEETQFC----PGNWCDRRA 421
G+S C TS G + +E+ Q C G C+R A
Sbjct: 933 ENSTWYFIDCPACQCNGHSTCFTS-VGSFPPVTIEKCQSCQNHTTGAHCERCA 984
>U97005-13|AAB52290.1| 868|Caenorhabditis elegans Hypothetical
protein F19F10.11b protein.
Length = 868
Score = 28.3 bits (60), Expect = 7.5
Identities = 12/24 (50%), Positives = 19/24 (79%), Gaps = 1/24 (4%)
Frame = -3
Query: 511 RLPDELR-RPGEVPLPRGDPVLPG 443
+LP+E++ +PGE+ L DP+LPG
Sbjct: 31 QLPEEIKLKPGEMILVPDDPMLPG 54
>U97005-12|AAB52289.1| 1121|Caenorhabditis elegans Hypothetical
protein F19F10.11a protein.
Length = 1121
Score = 28.3 bits (60), Expect = 7.5
Identities = 12/24 (50%), Positives = 19/24 (79%), Gaps = 1/24 (4%)
Frame = -3
Query: 511 RLPDELR-RPGEVPLPRGDPVLPG 443
+LP+E++ +PGE+ L DP+LPG
Sbjct: 31 QLPEEIKLKPGEMILVPDDPMLPG 54
>AC024777-5|AAF60564.1| 506|Caenorhabditis elegans Hypothetical
protein Y42H9AR.1 protein.
Length = 506
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +3
Query: 561 ISSDYAKPASPTYQNTSSFHSEKMTPHKYTSTVQSNY--STHTPGYNVGQSP 710
+ + Y PA+ T N+S + + +P Y + QS+Y S P ++ +P
Sbjct: 391 VPTSYYPPAASTASNSSGYQAPYYSPPSYPTQQQSSYVPSAVPPMFSATSAP 442
>U88169-7|ABQ13064.1| 205|Caenorhabditis elegans Hypothetical
protein T03F1.8b protein.
Length = 205
Score = 27.9 bits (59), Expect = 9.9
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +3
Query: 132 TFDSNRNFKLKKTVLTCFS--KICVISRECQDIIEMSNTH 245
TF N KKTVL + KICV+ E Q + + N+H
Sbjct: 84 TFSGNTYGTSKKTVLEIENSGKICVLDIELQGVRNIKNSH 123
>U88169-6|AAB42236.2| 216|Caenorhabditis elegans Hypothetical
protein T03F1.8a protein.
Length = 216
Score = 27.9 bits (59), Expect = 9.9
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +3
Query: 132 TFDSNRNFKLKKTVLTCFS--KICVISRECQDIIEMSNTH 245
TF N KKTVL + KICV+ E Q + + N+H
Sbjct: 95 TFSGNTYGTSKKTVLEIENSGKICVLDIELQGVRNIKNSH 134
>AF040647-10|AAB94993.1| 124|Caenorhabditis elegans Hypothetical
protein F54D12.2 protein.
Length = 124
Score = 27.9 bits (59), Expect = 9.9
Identities = 8/29 (27%), Positives = 19/29 (65%)
Frame = -2
Query: 293 RARFNYFSIHVIVDKIMCIRHFDNILTLS 207
++ NY ++ + DK+ C+++F ++ T S
Sbjct: 68 KSLLNYIAVKYVYDKVSCLKNFASLFTSS 96
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,312,584
Number of Sequences: 27780
Number of extensions: 351918
Number of successful extensions: 1278
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1276
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2160943708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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