Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_F13
         (417 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM712904-1|CAN84643.1|   86|Tribolium castaneum hypothetical pro...    22   2.1  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        21   3.6  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    21   4.8  
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           21   6.4  
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    20   8.4  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    20   8.4  

>AM712904-1|CAN84643.1|   86|Tribolium castaneum hypothetical
           protein protein.
          Length = 86

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 252 FTVTSGVVRNFSLLYLKHIH 311
           F + +G V  F + Y+KH H
Sbjct: 31  FLIIAGCVSPFVIGYVKHFH 50


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +1

Query: 91  TPTASQPSGEGRKGSDVQSYKYTESFSFRDG 183
           TP  S+P  + +  SD+   K +   S+ DG
Sbjct: 225 TPVVSEPIYDKKAMSDLMIVKLSHCNSYVDG 255


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -1

Query: 180 ISKTKTFSILIT 145
           +SKTKTF  L+T
Sbjct: 400 LSKTKTFCTLVT 411


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 11/49 (22%), Positives = 20/49 (40%)
 Frame = +1

Query: 70  NSAATQPTPTASQPSGEGRKGSDVQSYKYTESFSFRDGLQPSNRSRTSA 216
           + A++ PTP+ S  S      S   +  + E+F   +   P +     A
Sbjct: 197 SEASSSPTPSHSSESSFSAASSYTNTIYHQENFENYEPKSPEDEELLDA 245


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 10/38 (26%), Positives = 17/38 (44%)
 Frame = +1

Query: 85  QPTPTASQPSGEGRKGSDVQSYKYTESFSFRDGLQPSN 198
           +P       +G+G   S+  S  +T+  S  D   PS+
Sbjct: 40  KPPELTGSTNGDGGARSNADSTSHTDGASTPDVRPPSS 77


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 10/38 (26%), Positives = 17/38 (44%)
 Frame = +1

Query: 85  QPTPTASQPSGEGRKGSDVQSYKYTESFSFRDGLQPSN 198
           +P       +G+G   S+  S  +T+  S  D   PS+
Sbjct: 196 KPPELTGSTNGDGGARSNADSTSHTDGASTPDVRPPSS 233


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,347
Number of Sequences: 336
Number of extensions: 1087
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  9174063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)