Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_F13
         (417 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ...    26   2.7  
SPAC10F6.15 |||S. pombe specific UPF0300 family protein 1|Schizo...    25   4.7  
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar...    25   6.2  
SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|ch...    25   6.2  
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ...    24   8.2  

>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = +1

Query: 46  WSTAISRVNSAATQPTPTASQPS-GEGRKGSDVQSYKYTESFSFRDGL-QPSNRSRTS 213
           WS A+S  +S A  P P+ S P+ G  + G    S K +  F+  + +  P   SR S
Sbjct: 69  WSGALSLASSRAASPAPSDSFPTFGYSQLGGLENSSKGSALFNSANSIGTPYLSSRNS 126


>SPAC10F6.15 |||S. pombe specific UPF0300 family protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 432

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 337 RDLYLFGCTCICLRYSSEKF 278
           RD++  G TC C+  SS  F
Sbjct: 229 RDIFALGSTCNCIVVSSSNF 248


>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 15/60 (25%), Positives = 24/60 (40%)
 Frame = +1

Query: 37  RXTWSTAISRVNSAATQPTPTASQPSGEGRKGSDVQSYKYTESFSFRDGLQPSNRSRTSA 216
           R   S A++       + TP  SQ        SD+ +Y Y +   +R     SN ++  A
Sbjct: 462 RSASSAALNLPRDTDIKATPNLSQSGNINSDNSDLSNYPYNDYRVYRMSHCSSNSNKVLA 521


>SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 204

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = -3

Query: 280 FLTTPEVTVNRLLILQHFSFYPH 212
           FLT     +N L    HF F PH
Sbjct: 152 FLTVFSANLNALNFYHHFDFVPH 174


>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 377

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 15/54 (27%), Positives = 28/54 (51%)
 Frame = +1

Query: 55  AISRVNSAATQPTPTASQPSGEGRKGSDVQSYKYTESFSFRDGLQPSNRSRTSA 216
           AI++  +   +PT    Q     +   + +SY Y+ S ++   L  SNRS+++A
Sbjct: 16  AINQYKNEKAEPT----QVLDAAKANKNTRSYPYSVSRNYSFILNKSNRSKSTA 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,151,226
Number of Sequences: 5004
Number of extensions: 18235
Number of successful extensions: 43
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)