Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_F13
         (417 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0113 - 12647599-12648052,12648078-12648319                       29   2.0  
01_01_0773 + 6002563-6003069,6003183-6003299,6003447-6003539           27   4.6  
06_03_0084 - 16386962-16387033,16387124-16387175,16387252-163873...    27   8.0  
01_05_0474 - 22552599-22552687,22553494-22553631,22553766-225544...    27   8.0  

>01_03_0113 - 12647599-12648052,12648078-12648319
          Length = 231

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +1

Query: 28  LISRXTWSTAISRVNSAATQPTPTASQPSGEGRKGSDVQSYKYT 159
           LI R  W++A + +  A++ P P AS PS      +   S   T
Sbjct: 25  LICRAAWASAATAMAPASSPPPPPASPPSAASPPATSTASRSRT 68


>01_01_0773 + 6002563-6003069,6003183-6003299,6003447-6003539
          Length = 238

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +1

Query: 28  LISRXTWSTAISRVNSAATQPTPTASQPSGEG 123
           L  R  W    +R  +AATQP P    P+  G
Sbjct: 35  LAPRCQWRPLTARAQAAATQPDPEHQAPANGG 66


>06_03_0084 -
           16386962-16387033,16387124-16387175,16387252-16387313,
           16387509-16387543,16387637-16387679,16388610-16388692,
           16388829-16388917,16390415-16390681,16391370-16391446,
           16391546-16391677,16391802-16391870,16392464-16392529,
           16392603-16392773,16392848-16392916,16393005-16393086,
           16393175-16393219,16393535-16393659,16394271-16394525,
           16396561-16396722
          Length = 651

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 52  TAISRVNSAATQPTPTASQPSGEGRKGSDVQSY 150
           ++I  ++ AA   T  +SQPSG   +  ++QSY
Sbjct: 572 SSIEEISDAADASTTGSSQPSGVHFREKELQSY 604


>01_05_0474 -
           22552599-22552687,22553494-22553631,22553766-22554447,
           22555120-22555167,22555395-22556042,22556960-22557310,
           22558622-22558690
          Length = 674

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = +1

Query: 58  ISRVNSAATQPTPTASQPSGEGRKGSDVQSYKYTESFSFRDGLQPSNRSRTS 213
           +SRV++  + PTP A +P     K S +  +  ++     + L+PS R RT+
Sbjct: 382 LSRVHADLSTPTPIAPRPRTSKMKFSPLGHFTLSDP-KHPNVLEPSFRRRTA 432


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,269,526
Number of Sequences: 37544
Number of extensions: 110063
Number of successful extensions: 350
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 350
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)