Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_F13
         (417 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014298-511|AAF45862.2|  903|Drosophila melanogaster CG32498-PM...    28   5.7  
AY071291-1|AAL48913.1|  535|Drosophila melanogaster RE31829p pro...    27   10.0 
AE014297-1884|AAF55086.2|  535|Drosophila melanogaster CG7825-PA...    27   10.0 

>AE014298-511|AAF45862.2|  903|Drosophila melanogaster CG32498-PM,
           isoform M protein.
          Length = 903

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
 Frame = +1

Query: 43  TWSTAISRVNSAATQPTPTASQPSGEGRK----GSDVQSYKYTESFSFRDGLQPSNRSRT 210
           T +T  +      T PTPTA   +   R      + V+  K  +  SF D  Q   ++ T
Sbjct: 28  TTATRAATTTPVTTAPTPTAITTTYRSRNLLKATAKVKKKKKWKQISFVDDQQRLKQAAT 87

Query: 211 SAGRKKN 231
           SA RK++
Sbjct: 88  SAERKRS 94


>AY071291-1|AAL48913.1|  535|Drosophila melanogaster RE31829p
           protein.
          Length = 535

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +1

Query: 31  ISRXTW-STAISRVNSAATQPTPTASQPSGEGRKGSDVQSYKYTES 165
           + + TW   A S +N   T P P+ S P+   R  S+V S + + S
Sbjct: 3   VRKKTWVRCAFSEMN-LTTSPAPSESTPAKRTRSASNVSSSRVSRS 47


>AE014297-1884|AAF55086.2|  535|Drosophila melanogaster CG7825-PA
           protein.
          Length = 535

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +1

Query: 31  ISRXTW-STAISRVNSAATQPTPTASQPSGEGRKGSDVQSYKYTES 165
           + + TW   A S +N   T P P+ S P+   R  S+V S + + S
Sbjct: 3   VRKKTWVRCAFSEMN-LTTSPAPSESTPAKRTRSASNVSSSRVSRS 47


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,333,695
Number of Sequences: 53049
Number of extensions: 192416
Number of successful extensions: 655
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1251032760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)