Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_F13
         (417 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74030-16|CAI79165.1|  481|Caenorhabditis elegans Hypothetical p...    27   5.5  
Z74030-15|CAI79164.1|  477|Caenorhabditis elegans Hypothetical p...    27   5.5  
Z74030-7|CAA98447.2|  559|Caenorhabditis elegans Hypothetical pr...    27   5.5  
Z74030-6|CAA98444.2|  508|Caenorhabditis elegans Hypothetical pr...    27   5.5  
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p...    27   5.5  
AC199241-1|ABO33279.1|  343|Caenorhabditis elegans Hypothetical ...    27   5.5  
U80952-4|AAB38095.1|  662|Caenorhabditis elegans Hypothetical pr...    26   9.5  

>Z74030-16|CAI79165.1|  481|Caenorhabditis elegans Hypothetical
           protein D1054.9e protein.
          Length = 481

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 19  HL*LISRXTWSTAISRVNSAATQPTPTASQPS 114
           H  L+ R  W+T I R+ ++ T  TP+   P+
Sbjct: 103 HKLLLKRRQWTTKIGRILASTTPMTPSTVVPT 134


>Z74030-15|CAI79164.1|  477|Caenorhabditis elegans Hypothetical
           protein D1054.9d protein.
          Length = 477

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 19  HL*LISRXTWSTAISRVNSAATQPTPTASQPS 114
           H  L+ R  W+T I R+ ++ T  TP+   P+
Sbjct: 103 HKLLLKRRQWTTKIGRILASTTPMTPSTVVPT 134


>Z74030-7|CAA98447.2|  559|Caenorhabditis elegans Hypothetical
           protein D1054.9b protein.
          Length = 559

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 19  HL*LISRXTWSTAISRVNSAATQPTPTASQPS 114
           H  L+ R  W+T I R+ ++ T  TP+   P+
Sbjct: 103 HKLLLKRRQWTTKIGRILASTTPMTPSTVVPT 134


>Z74030-6|CAA98444.2|  508|Caenorhabditis elegans Hypothetical
           protein D1054.9a protein.
          Length = 508

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 19  HL*LISRXTWSTAISRVNSAATQPTPTASQPS 114
           H  L+ R  W+T I R+ ++ T  TP+   P+
Sbjct: 103 HKLLLKRRQWTTKIGRILASTTPMTPSTVVPT 134


>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
            protein T19D12.1 protein.
          Length = 1844

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 18/63 (28%), Positives = 32/63 (50%)
 Frame = +1

Query: 31   ISRXTWSTAISRVNSAATQPTPTASQPSGEGRKGSDVQSYKYTESFSFRDGLQPSNRSRT 210
            +S    ST I + +S+++  +PT++QP+    + S   +   T S S      P+ +S T
Sbjct: 904  VSTVASSTTIPQGSSSSSPQSPTSAQPA----QSSSTSAATVTVSSSQSPTSSPAQQSST 959

Query: 211  SAG 219
             AG
Sbjct: 960  PAG 962


>AC199241-1|ABO33279.1|  343|Caenorhabditis elegans Hypothetical
           protein 2RSSE.1 protein.
          Length = 343

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
 Frame = +1

Query: 55  AISRVNSAATQPTPTASQP---SGEGRKGS 135
           AI     A+ +PTPT S+P   +G GR GS
Sbjct: 277 AIHLAEEASPEPTPTTSKPPRGNGVGRAGS 306


>U80952-4|AAB38095.1|  662|Caenorhabditis elegans Hypothetical
           protein F54H5.5 protein.
          Length = 662

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
 Frame = +1

Query: 97  TASQPSGEGRKGSDVQSYKYTESF-----SFRDGLQPSNRSRTSAGRKKNV 234
           T+  P+ + R+ S +Q    T  F     SF D  Q   RSR  AGR+ ++
Sbjct: 123 TSPVPAEKTRRSSGIQHANSTIDFDADVSSFFDSTQIHRRSRQQAGREPSI 173


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,411,473
Number of Sequences: 27780
Number of extensions: 102771
Number of successful extensions: 297
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 293
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)