Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_F12
         (509 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein S26|Schizosa...   125   4e-30
SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein S26|Sc...   121   5e-29
SPCC126.15c |sec65||signal recognition particle subunit Sec65 |S...    29   0.53 
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid...    26   2.9  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    25   5.0  
SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III ...    25   5.0  
SPBC27B12.12c |||CorA family magnesium ion transporter |Schizosa...    25   6.6  

>SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein
           S26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 119

 Score =  125 bits (301), Expect = 4e-30
 Identities = 60/100 (60%), Positives = 77/100 (77%), Gaps = 3/100 (3%)
 Frame = +3

Query: 114 VKAVXCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQLPKLYAKLHYCVSC 293
           VK V C NC+R VPKDKAIK++ IRN+VE AA+RD+++ASVY  + +PKLY KL YCVSC
Sbjct: 18  VKFVRCINCSRAVPKDKAIKRWTIRNMVETAAIRDLSEASVYSEYTIPKLYIKLQYCVSC 77

Query: 294 AIHSKVVRNRSKKDRRIRT-PPKSNFPRDMSR--PQAVQR 404
           AIHS+VVR RS++ RRIRT PP+  + RD  +  P AV +
Sbjct: 78  AIHSRVVRVRSREGRRIRTPPPRVRYNRDGKKVNPTAVAK 117


>SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein
           S26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 120

 Score =  121 bits (292), Expect = 5e-29
 Identities = 57/99 (57%), Positives = 76/99 (76%), Gaps = 3/99 (3%)
 Frame = +3

Query: 117 KAVXCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQLPKLYAKLHYCVSCA 296
           K V C NC+R VPKDKAIK++ IRN+VE AA+RD+++ASVY  + +PK+Y KL YCVSCA
Sbjct: 19  KFVRCINCSRAVPKDKAIKRWNIRNMVETAAIRDLSEASVYSEYAIPKIYVKLQYCVSCA 78

Query: 297 IHSKVVRNRSKKDRRIRT-PPKSNFPRDMSR--PQAVQR 404
           IH++VVR RS++ RRIRT PP+  + RD  R  P A+ +
Sbjct: 79  IHARVVRVRSREGRRIRTPPPRVRYNRDGKRVNPAAIAK 117


>SPCC126.15c |sec65||signal recognition particle subunit Sec65
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 199

 Score = 28.7 bits (61), Expect = 0.53
 Identities = 15/26 (57%), Positives = 18/26 (69%)
 Frame = +3

Query: 144 RCVPKDKAIKKFVIRNIVEAAAVRDI 221
           RCVPKDKAI   + +NI  A  VRD+
Sbjct: 20  RCVPKDKAILNPLAKNI--ADVVRDL 43


>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
           peptidyl-prolyl cis-trans isomerase
           Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 610

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 11/40 (27%), Positives = 24/40 (60%)
 Frame = -1

Query: 203 RFYDVPNHELFDSLVLWHAPRAVCAXHSFNVTTSMLGAXS 84
           + +DV + +L + + L   P+A+C  +S ++ TS++   S
Sbjct: 115 KVFDVESIDLVNIIDLEFLPKAICCFNSPSLKTSLIAVSS 154


>SPBC119.07 |ppk19||serine/threonine protein kinase
            Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -1

Query: 122  SFNVTTSMLGAXSITALTXHVXNLRXR*TKNGGKKAS 12
            S N TT++ G  S  + T H+   +    +NG KK+S
Sbjct: 1102 STNDTTNVAGIRSQRSFTTHIDLKKLTTRQNGAKKSS 1138


>SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III
           subunit Rpc40 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 348

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 310 LSGTDRRKTEESVLLPRVTSLGT 378
           ++  DR +TE SVL  RVT +G+
Sbjct: 1   MAAVDRSRTEISVLSDRVTDVGS 23


>SPBC27B12.12c |||CorA family magnesium ion transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 282 CVSCAIHSKVVRNRSKKDRRIRTPPKS 362
           C SC+   K   N+  + RR++  PKS
Sbjct: 142 CGSCSDSKKPQSNKKHRGRRVKHSPKS 168


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,464,612
Number of Sequences: 5004
Number of extensions: 23692
Number of successful extensions: 58
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)