Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_F12
         (509 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92834-4|CAB07387.1|  117|Caenorhabditis elegans Hypothetical pr...   135   2e-32
Z69634-3|CAA93454.4|  553|Caenorhabditis elegans Hypothetical pr...    28   3.4  
AL132904-23|CAC35839.2|  312|Caenorhabditis elegans Hypothetical...    27   6.0  
AL132904-7|CAC35838.1|  430|Caenorhabditis elegans Hypothetical ...    27   6.0  

>Z92834-4|CAB07387.1|  117|Caenorhabditis elegans Hypothetical
           protein F39B2.6 protein.
          Length = 117

 Score =  135 bits (327), Expect = 2e-32
 Identities = 60/81 (74%), Positives = 67/81 (82%)
 Frame = +3

Query: 114 VKAVXCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQLPKLYAKLHYCVSC 293
           V  + CTNC RC PKDKAIKKFV+RNIVEAAAVRDI DAS Y  + LPKLY KLHYC++C
Sbjct: 18  VAFIRCTNCGRCCPKDKAIKKFVVRNIVEAAAVRDIGDASAYTQYALPKLYHKLHYCIAC 77

Query: 294 AIHSKVVRNRSKKDRRIRTPP 356
           AIHSKVVRNRS++ RR R PP
Sbjct: 78  AIHSKVVRNRSREARRDRNPP 98


>Z69634-3|CAA93454.4|  553|Caenorhabditis elegans Hypothetical
           protein B0001.5 protein.
          Length = 553

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = +2

Query: 278 LLRVMRHPQQSCQEQIEERQKNPYSSQE*LP*GHVTSTGSAK 403
           ++ V + P +S   ++ + QKN Y+S E    GH TS+ +A+
Sbjct: 374 VINVYKEPSRSHANELYDSQKNQYTSHE----GHSTSSPTAE 411


>AL132904-23|CAC35839.2|  312|Caenorhabditis elegans Hypothetical
           protein Y111B2A.10b protein.
          Length = 312

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
 Frame = +3

Query: 114 VKAVXCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQL-PKLYAKLHYCVS 290
           +K + C NC+     +K+++  +IR+  E A   ++  A      +L P    K H    
Sbjct: 81  LKEIQCDNCSLVFQSEKSLQSHIIRHHQEDADELEVWKAPCSICKELFPSTSVKTHEWY- 139

Query: 291 CAIHSKVV-RNRSKKDRRIRTPPKS 362
           C    K++ + R  K  ++++ P S
Sbjct: 140 CKNREKIIEKQRVSKILKVQSLPSS 164


>AL132904-7|CAC35838.1|  430|Caenorhabditis elegans Hypothetical
           protein Y111B2A.10a protein.
          Length = 430

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
 Frame = +3

Query: 114 VKAVXCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQL-PKLYAKLHYCVS 290
           +K + C NC+     +K+++  +IR+  E A   ++  A      +L P    K H    
Sbjct: 199 LKEIQCDNCSLVFQSEKSLQSHIIRHHQEDADELEVWKAPCSICKELFPSTSVKTHEWY- 257

Query: 291 CAIHSKVV-RNRSKKDRRIRTPPKS 362
           C    K++ + R  K  ++++ P S
Sbjct: 258 CKNREKIIEKQRVSKILKVQSLPSS 282


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,359,001
Number of Sequences: 27780
Number of extensions: 142677
Number of successful extensions: 348
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 348
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)