Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_F11
         (585 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0300 + 27681204-27681656,27681745-27681840,27681933-276820...    31   0.68 
06_03_0871 - 25562767-25563509,25563889-25565776                       29   3.6  
04_03_0298 + 14080353-14080927,14081041-14081554                       28   6.3  
04_03_0293 - 14001443-14001956,14002070-14002644                       28   6.3  
10_08_0521 + 18500105-18500529,18501216-18501284,18501467-185015...    27   8.3  
02_05_0044 - 25375239-25376233,25377233-25377364,25377586-25378504     27   8.3  

>02_05_0300 +
           27681204-27681656,27681745-27681840,27681933-27682022,
           27682126-27682227,27682310-27682456,27683608-27683748,
           27683749-27683808,27685133-27685230,27685308-27685410,
           27685954-27686037
          Length = 457

 Score = 31.1 bits (67), Expect = 0.68
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +1

Query: 208 QEEGKLDNPQSENAALTVTGQYAYVAP-DGKHYTVTFTAGPNGFQPKTSL 354
           Q E  L  P  +  AL V  +  + A  DG+     F+A  NGF+P  SL
Sbjct: 220 QAEMNLTGPTGQVYALAVGNELLFAATQDGRILAWRFSAATNGFEPAASL 269


>06_03_0871 - 25562767-25563509,25563889-25565776
          Length = 876

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 4/96 (4%)
 Frame = +1

Query: 58  KYVTVACVLVALCSGAPQQNPQDVQILRFDSNV--EPDGYSFAYETSDGTSRQEEGKLDN 231
           ++V V  VLV +C GA   N   V +L F   V  +P G    +  +D +     G + N
Sbjct: 4   RWVVVFWVLVVMCRGACGLNADGVLLLSFKYAVTADPLGALAGWGYADESPCAWNGVVCN 63

Query: 232 --PQSENAALTVTGQYAYVAPDGKHYTVTFTAGPNG 333
             PQ++ AA          A +G + +       NG
Sbjct: 64  GFPQADAAAAWTANVTGVAAAEGGNSSAAVPVPSNG 99


>04_03_0298 + 14080353-14080927,14081041-14081554
          Length = 362

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 17/43 (39%), Positives = 20/43 (46%)
 Frame = +1

Query: 55  LKYVTVACVLVALCSGAPQQNPQDVQILRFDSNVEPDGYSFAY 183
           L +V VA VLV L  G        V  L+F +   PDG   AY
Sbjct: 314 LLFVAVAGVLVDLIMGTGGNVAPPVTDLKFHTATMPDGMQLAY 356


>04_03_0293 - 14001443-14001956,14002070-14002644
          Length = 362

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 17/43 (39%), Positives = 20/43 (46%)
 Frame = +1

Query: 55  LKYVTVACVLVALCSGAPQQNPQDVQILRFDSNVEPDGYSFAY 183
           L +V VA VLV L  G        V  L+F +   PDG   AY
Sbjct: 314 LLFVAVAGVLVDLIMGTGGNVAPPVTDLKFHTATMPDGMQLAY 356


>10_08_0521 +
           18500105-18500529,18501216-18501284,18501467-18501555,
           18501726-18501838,18502023-18502124,18502576-18502663,
           18502795-18503361,18503766-18504149,18504168-18504384,
           18504466-18504548,18505174-18505256,18505796-18506032,
           18506481-18506658,18506814-18507328,18507740-18507916,
           18508385-18508768,18508885-18509031
          Length = 1285

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = +1

Query: 181 YETSDGTSRQEEGKLDNPQSENAAL---TVTGQYAYVAPDGKHYTVTFTAGPNG 333
           Y  S+G   +++ ++DN  +E A++    V+   AYV+P+    + T T   +G
Sbjct: 410 YLVSEGAQTKKQAQVDNETTEVASIHCCPVSNFSAYVSPEAAAQSATTTTWGSG 463


>02_05_0044 - 25375239-25376233,25377233-25377364,25377586-25378504
          Length = 681

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 1/96 (1%)
 Frame = +1

Query: 148 SNVEPDGYSFAYETSD-GTSRQEEGKLDNPQSENAALTVTGQYAYVAPDGKHYTVTFTAG 324
           SN+  DG SF  + SD G SR     LD     +    V G + Y+ P+  H T   T  
Sbjct: 471 SNILLDG-SFTTKVSDFGASRSVS--LDET---HVVTIVQGTFGYLDPEYYH-TGQLTEK 523

Query: 325 PNGFQPKTSLGQK*KPQKPVYINNTPSQHKLDNDFV 432
            + +     L +    +KP++IN+  ++  L + FV
Sbjct: 524 SDVYSFGVILVELLTRKKPIFINDVGTKQSLSHYFV 559


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,405,183
Number of Sequences: 37544
Number of extensions: 317787
Number of successful extensions: 692
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)