Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_F11
(585 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p... 31 0.80
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 31 0.80
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 31 0.80
Z70753-12|CAA94761.2| 585|Caenorhabditis elegans Hypothetical p... 28 4.2
L14745-12|AAR25659.1| 366|Caenorhabditis elegans Hypothetical p... 28 5.6
AF304119-1|AAG50232.1| 326|Caenorhabditis elegans seven transme... 28 5.6
AF068718-6|AAC17769.2| 326|Caenorhabditis elegans Hypothetical ... 28 5.6
AC084152-7|AAK39310.1| 172|Caenorhabditis elegans Hypothetical ... 28 5.6
Z82266-13|CAB05187.1| 1080|Caenorhabditis elegans Hypothetical p... 27 9.8
Z68295-2|CAA92588.1| 1080|Caenorhabditis elegans Hypothetical pr... 27 9.8
>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
protein K07E12.1b protein.
Length = 12268
Score = 30.7 bits (66), Expect = 0.80
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 10/83 (12%)
Frame = +1
Query: 79 VLVALCSGAPQQNPQDVQILRFDSNVEPDGY--------SFAYETSDGTSRQEEGKLDNP 234
VLV GA + +P D +PDG +F E D ++ EEGK P
Sbjct: 4301 VLVPSDEGATKTHPTDETSDAVHPITKPDGTPLATDSTGNFVTENGDVITKDEEGKPLGP 4360
Query: 235 QSENAALTVTGQYAY--VAPDGK 297
+ +G Y Y + PDG+
Sbjct: 4361 NGQILPTDASGNYIYPVIGPDGQ 4383
Score = 29.5 bits (63), Expect = 1.8
Identities = 30/93 (32%), Positives = 35/93 (37%), Gaps = 5/93 (5%)
Frame = +1
Query: 172 SFAYETSDGTSRQEEGKLDNPQSENAALTVTGQYAY----VAPDGKHYTVTFTAGPNG-F 336
SF E D EEGK P E A +G Y Y V P + VT GP+G
Sbjct: 5048 SFVTENGDRIEFNEEGKPLGPDGEVLATDASGNYVYPGSVVEPTAEPQEVTH--GPDGQV 5105
Query: 337 QPKTSLGQK*KPQKPVYINNTPSQHKLDNDFVG 435
P + G KP+Y P L D G
Sbjct: 5106 LPTDASG------KPIYPVRGPDGIPLPTDASG 5132
Score = 27.5 bits (58), Expect = 7.4
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = +1
Query: 172 SFAYETSDGTSRQEEGKLDNPQSENAALTVTGQYAY--VAPDGK 297
SF E + R E+GK P + +G Y Y V PDG+
Sbjct: 4485 SFVTEGGEIVERDEDGKPLGPDGQVLPTDASGNYIYPVVGPDGQ 4528
Score = 27.5 bits (58), Expect = 7.4
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = +1
Query: 172 SFAYETSDGTSRQEEGKLDNPQSENAALTVTGQYAY--VAPDGK 297
SF + + +EGK P + + +G Y Y V PDG+
Sbjct: 7872 SFVTDDGQAIGKDDEGKPIGPDGQTLPIDDSGNYIYPVVGPDGQ 7915
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
protein K07E12.1a protein.
Length = 13100
Score = 30.7 bits (66), Expect = 0.80
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 10/83 (12%)
Frame = +1
Query: 79 VLVALCSGAPQQNPQDVQILRFDSNVEPDGY--------SFAYETSDGTSRQEEGKLDNP 234
VLV GA + +P D +PDG +F E D ++ EEGK P
Sbjct: 4346 VLVPSDEGATKTHPTDETSDAVHPITKPDGTPLATDSTGNFVTENGDVITKDEEGKPLGP 4405
Query: 235 QSENAALTVTGQYAY--VAPDGK 297
+ +G Y Y + PDG+
Sbjct: 4406 NGQILPTDASGNYIYPVIGPDGQ 4428
Score = 29.5 bits (63), Expect = 1.8
Identities = 30/93 (32%), Positives = 35/93 (37%), Gaps = 5/93 (5%)
Frame = +1
Query: 172 SFAYETSDGTSRQEEGKLDNPQSENAALTVTGQYAY----VAPDGKHYTVTFTAGPNG-F 336
SF E D EEGK P E A +G Y Y V P + VT GP+G
Sbjct: 5093 SFVTENGDRIEFNEEGKPLGPDGEVLATDASGNYVYPGSVVEPTAEPQEVTH--GPDGQV 5150
Query: 337 QPKTSLGQK*KPQKPVYINNTPSQHKLDNDFVG 435
P + G KP+Y P L D G
Sbjct: 5151 LPTDASG------KPIYPVRGPDGIPLPTDASG 5177
Score = 27.5 bits (58), Expect = 7.4
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = +1
Query: 172 SFAYETSDGTSRQEEGKLDNPQSENAALTVTGQYAY--VAPDGK 297
SF E + R E+GK P + +G Y Y V PDG+
Sbjct: 4530 SFVTEGGEIVERDEDGKPLGPDGQVLPTDASGNYIYPVVGPDGQ 4573
Score = 27.5 bits (58), Expect = 7.4
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = +1
Query: 172 SFAYETSDGTSRQEEGKLDNPQSENAALTVTGQYAY--VAPDGK 297
SF + + +EGK P + + +G Y Y V PDG+
Sbjct: 7917 SFVTDDGQAIGKDDEGKPIGPDGQTLPIDDSGNYIYPVVGPDGQ 7960
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
protein.
Length = 13100
Score = 30.7 bits (66), Expect = 0.80
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 10/83 (12%)
Frame = +1
Query: 79 VLVALCSGAPQQNPQDVQILRFDSNVEPDGY--------SFAYETSDGTSRQEEGKLDNP 234
VLV GA + +P D +PDG +F E D ++ EEGK P
Sbjct: 4346 VLVPSDEGATKTHPTDETSDAVHPITKPDGTPLATDSTGNFVTENGDVITKDEEGKPLGP 4405
Query: 235 QSENAALTVTGQYAY--VAPDGK 297
+ +G Y Y + PDG+
Sbjct: 4406 NGQILPTDASGNYIYPVIGPDGQ 4428
Score = 29.5 bits (63), Expect = 1.8
Identities = 30/93 (32%), Positives = 35/93 (37%), Gaps = 5/93 (5%)
Frame = +1
Query: 172 SFAYETSDGTSRQEEGKLDNPQSENAALTVTGQYAY----VAPDGKHYTVTFTAGPNG-F 336
SF E D EEGK P E A +G Y Y V P + VT GP+G
Sbjct: 5093 SFVTENGDRIEFNEEGKPLGPDGEVLATDASGNYVYPGSVVEPTAEPQEVTH--GPDGQV 5150
Query: 337 QPKTSLGQK*KPQKPVYINNTPSQHKLDNDFVG 435
P + G KP+Y P L D G
Sbjct: 5151 LPTDASG------KPIYPVRGPDGIPLPTDASG 5177
Score = 27.5 bits (58), Expect = 7.4
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = +1
Query: 172 SFAYETSDGTSRQEEGKLDNPQSENAALTVTGQYAY--VAPDGK 297
SF E + R E+GK P + +G Y Y V PDG+
Sbjct: 4530 SFVTEGGEIVERDEDGKPLGPDGQVLPTDASGNYIYPVVGPDGQ 4573
Score = 27.5 bits (58), Expect = 7.4
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = +1
Query: 172 SFAYETSDGTSRQEEGKLDNPQSENAALTVTGQYAY--VAPDGK 297
SF + + +EGK P + + +G Y Y V PDG+
Sbjct: 7917 SFVTDDGQAIGKDDEGKPIGPDGQTLPIDDSGNYIYPVVGPDGQ 7960
>Z70753-12|CAA94761.2| 585|Caenorhabditis elegans Hypothetical
protein F40F9.5 protein.
Length = 585
Score = 28.3 bits (60), Expect = 4.2
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Frame = -1
Query: 306 SVVLAVRSYVSILSSNCQSCILGL---WVVEFAFFLSGC-TITSFVRKAV 169
+VV + S+ ILSS + I + W FAFF+SGC IT F+ + V
Sbjct: 479 TVVSIIISFSPILSSLIFNNIFNMTLTWWPGFAFFVSGCFQITVFIGQLV 528
>L14745-12|AAR25659.1| 366|Caenorhabditis elegans Hypothetical
protein C02F5.3 protein.
Length = 366
Score = 27.9 bits (59), Expect = 5.6
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +1
Query: 25 LNSTRILTKMLKYVTVACVLVALCSGAPQQNPQDVQILRFDSNVE 159
LN +L KM +Y+ + V AP P+D ILR + +E
Sbjct: 274 LNMDYLLEKMWEYLALVRVYTKKPGNAPDLGPEDGIILRGGATIE 318
>AF304119-1|AAG50232.1| 326|Caenorhabditis elegans seven
transmembrane protein protein.
Length = 326
Score = 27.9 bits (59), Expect = 5.6
Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = -1
Query: 291 VRSYVSILSSNCQSCILGLWVV--EFAFFLSGCTIT 190
V Y+ ++ N +C++ + + F FFL+GC+ T
Sbjct: 106 VSEYLCVILENVIACVIAVLIYPPRFTFFLNGCSKT 141
>AF068718-6|AAC17769.2| 326|Caenorhabditis elegans Hypothetical
protein R01B10.5 protein.
Length = 326
Score = 27.9 bits (59), Expect = 5.6
Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = -1
Query: 291 VRSYVSILSSNCQSCILGLWVV--EFAFFLSGCTIT 190
V Y+ ++ N +C++ + + F FFL+GC+ T
Sbjct: 106 VSEYLCVILENVIACVIAVLIYPPRFTFFLNGCSKT 141
>AC084152-7|AAK39310.1| 172|Caenorhabditis elegans Hypothetical
protein Y102A11A.7 protein.
Length = 172
Score = 27.9 bits (59), Expect = 5.6
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +1
Query: 64 VTVACVL-VALCSGAPQQNPQDVQILRFDSNVEPDGYSFAYETSDGTSRQEEGKLDNP 234
+TV C + + LC+ +N Q ++L+F S+ SFAY ++G G +P
Sbjct: 108 LTVICWMGIWLCNRRKDKN-QKKELLKFGSSSSVSNMSFAYPIANGHYHFGTGPFQSP 164
>Z82266-13|CAB05187.1| 1080|Caenorhabditis elegans Hypothetical
protein F23B2.12 protein.
Length = 1080
Score = 27.1 bits (57), Expect = 9.8
Identities = 15/62 (24%), Positives = 27/62 (43%)
Frame = +1
Query: 145 DSNVEPDGYSFAYETSDGTSRQEEGKLDNPQSENAALTVTGQYAYVAPDGKHYTVTFTAG 324
D N+ PD Y +ET G+ RQ + +N ++ + P G ++ + G
Sbjct: 562 DFNMSPDDYPAGFET--GSFRQRQDHFNNQNADFFQQRFFKNTQWAKPGGPNFLMIGGEG 619
Query: 325 PN 330
P+
Sbjct: 620 PD 621
>Z68295-2|CAA92588.1| 1080|Caenorhabditis elegans Hypothetical
protein F23B2.12 protein.
Length = 1080
Score = 27.1 bits (57), Expect = 9.8
Identities = 15/62 (24%), Positives = 27/62 (43%)
Frame = +1
Query: 145 DSNVEPDGYSFAYETSDGTSRQEEGKLDNPQSENAALTVTGQYAYVAPDGKHYTVTFTAG 324
D N+ PD Y +ET G+ RQ + +N ++ + P G ++ + G
Sbjct: 562 DFNMSPDDYPAGFET--GSFRQRQDHFNNQNADFFQQRFFKNTQWAKPGGPNFLMIGGEG 619
Query: 325 PN 330
P+
Sbjct: 620 PD 621
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,543,752
Number of Sequences: 27780
Number of extensions: 288853
Number of successful extensions: 740
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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