Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_F11
         (585 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    50   2e-08
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   8.9  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 50.0 bits (114), Expect = 2e-08
 Identities = 36/102 (35%), Positives = 49/102 (48%), Gaps = 9/102 (8%)
 Frame = +1

Query: 73  ACVLVALCSGAPQQNPQ--------DVQILRFDSNVEPDG-YSFAYETSDGTSRQEEGKL 225
           A V V LC+ A    PQ        D  I      V  DG Y   +ETS+G S QE G+ 
Sbjct: 1   ALVAVVLCTTATLAAPQRPSGGADKDAVITSQQLEVNFDGNYINNFETSNGISHQESGQP 60

Query: 226 DNPQSENAALTVTGQYAYVAPDGKHYTVTFTAGPNGFQPKTS 351
               +E   ++  G  +Y APDG+  ++T+ A  NGFQ + S
Sbjct: 61  KQVDNETPVVS-QGSDSYTAPDGQQVSITYVADENGFQVQGS 101


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +3

Query: 456 IIYPCHVQ*QKQFLISRAIWTLSFICTF 539
           + YP  +  ++  L+   +W LSF+  F
Sbjct: 171 VSYPQIMSPRRARLLVATVWILSFVICF 198


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,450
Number of Sequences: 438
Number of extensions: 3442
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16993167
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)