Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_F11
         (585 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g08920.1 68417.m01469 cryptochrome 1 apoprotein (CRY1) / flav...    29   2.3  
At4g38640.1 68417.m05469 choline transporter-related contains we...    28   5.3  
At3g04760.1 68416.m00512 pentatricopeptide (PPR) repeat-containi...    28   5.3  
At5g47690.1 68418.m05887 expressed protein                             27   7.0  
At4g21380.1 68417.m03089 S-locus protein kinase, putative (ARK3)...    27   7.0  
At3g04130.1 68416.m00437 pentatricopeptide (PPR) repeat-containi...    27   7.0  
At2g47160.1 68415.m05889 anion exchange family protein contains ...    27   9.2  

>At4g08920.1 68417.m01469 cryptochrome 1 apoprotein (CRY1) /
           flavin-type blue-light photoreceptor (HY4) contains Pfam
           PF03441: FAD binding domain of DNA photolyase; member of
           Pfam PF00875: deoxyribodipyrimidine photolyase
           superfamily; 99% identical to Cryptochrome 1 apoprotein
           (Blue light photoreceptor) (flavin-type blue-light
           photoreceptor) (SP:Q43125) [Arabidopsis thaliana]
          Length = 681

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +1

Query: 145 DSNVEPDGYSFAYETSDGTSRQEEGKLDNPQSENAALTVTGQY 273
           D+++E D   + Y T      +E  ++DNPQ E       G+Y
Sbjct: 390 DADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEY 432


>At4g38640.1 68417.m05469 choline transporter-related contains weak
           similarity to CD92 protein [Homo sapiens]
           gi|16945323|emb|CAC82175
          Length = 556

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 14/67 (20%), Positives = 31/67 (46%)
 Frame = -1

Query: 306 SVVLAVRSYVSILSSNCQSCILGLWVVEFAFFLSGCTITSFVRKAVAIGFHVAVKT*NLN 127
           SV+L ++ Y   +   C    +   +    ++   CT++S    A+ + + + V      
Sbjct: 159 SVLLLLKHYTKQIVYACLPLFVLFPIFFNVYWFVACTLSSSCSDALPLAYRILVLVFVFL 218

Query: 126 ILGILLW 106
           I+GI++W
Sbjct: 219 IIGIIVW 225


>At3g04760.1 68416.m00512 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 602

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -1

Query: 330 VGSRCESDSVVLAVRSYVSILSSNCQSCILGLWVVEFAFFLSG 202
           +GS C    + LA++    +LS NCQ  ++   ++  A  L G
Sbjct: 200 IGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEG 242


>At5g47690.1 68418.m05887 expressed protein
          Length = 1638

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 11/43 (25%), Positives = 24/43 (55%)
 Frame = +1

Query: 121  QDVQILRFDSNVEPDGYSFAYETSDGTSRQEEGKLDNPQSENA 249
            +D+Q  + +S+ + +G    ++ SD   +QE  +++    ENA
Sbjct: 1585 EDLQEAKTESSGDAEGKEAEHDDSDTEGKQENNEMEREAEENA 1627


>At4g21380.1 68417.m03089 S-locus protein kinase, putative (ARK3)
           identical to PIR|T05180|T05180 S-receptor kinase ARK3
           precursor - [Arabidopsis thaliana]
          Length = 850

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +1

Query: 97  SGAPQQNPQDVQILRFDSNVEPDGYSFAYETSDGTSR 207
           SG P+  P +  +  F ++ E   YSF    SD  SR
Sbjct: 228 SGVPEMQPFEYMVFNFTTSKEEVTYSFRITKSDVYSR 264


>At3g04130.1 68416.m00437 pentatricopeptide (PPR) repeat-containing
           protein
          Length = 508

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -1

Query: 123 LGILLWST*AKGYQHASDCH 64
           LGIL W+   KG++H+SD +
Sbjct: 105 LGILKWAESCKGHKHSSDAY 124


>At2g47160.1 68415.m05889 anion exchange family protein contains
           some similarity to SWISS-PROT:P04919 anion transport
           protein (anion exchange protein 1) [Mouse] {Mus
           musculus}
          Length = 704

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = -3

Query: 451 SRSLSCLQNHCLTYVETEYYLCTQVFGVFTSGPMRFWVGSRWVPL 317
           SR    L+++  T+VET  +    +F +F +  +    G  W+P+
Sbjct: 521 SRRFKVLEDYHATFVETVPFKTIAMFTLFQTTYLLICFGLTWIPI 565


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,596,976
Number of Sequences: 28952
Number of extensions: 260561
Number of successful extensions: 652
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1151426952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)