Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_F10
(738 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce... 48 1e-06
SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces po... 40 5e-04
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch... 33 0.032
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 33 0.056
SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 29 0.52
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 29 0.69
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 28 1.2
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 28 1.6
SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit Alp... 27 2.8
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch... 27 2.8
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 4.9
SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces... 26 6.4
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 25 8.5
>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 960
Score = 48.4 bits (110), Expect = 1e-06
Identities = 22/65 (33%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Frame = +2
Query: 497 ELGDSVFAAERIMKRRIRKNKV-EYYVKWKGWKPKHNTWEPEENILD-PRLIQSFMKGEE 670
E V+ E I+ R+ KN + EYY+KW G+ NTWEPE+N+ ++++ + K ++
Sbjct: 16 ETDADVYEVEDILADRVNKNGINEYYIKWAGYDWYDNTWEPEQNLFGAEKVLKKWKKRKK 75
Query: 671 VRRQG 685
+ +G
Sbjct: 76 LIAKG 80
>SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 39.5 bits (88), Expect = 5e-04
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Frame = +2
Query: 506 DSVFAAERIMKRRIRKNK--VEYYVKWKGW-KPKHNTWEPEEN 625
D FA E I+ R++K+ +YY+KW+G+ P NTW EE+
Sbjct: 173 DEEFAVEMILDSRMKKDGSGFQYYLKWEGYDDPSDNTWNDEED 215
>SPBC428.08c |clr4||histone H3 methyltransferase
Clr4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 490
Score = 33.5 bits (73), Expect = 0.032
Identities = 15/65 (23%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Frame = +2
Query: 515 FAAERIMKRRIRKNKVE--YYVKWKGWKPKHNTWEPEENILDPRLIQSFMKGEEVRRQGR 688
+ ERI+ ++ +N Y ++W + + +TWEP EN+ + + K + R +G
Sbjct: 8 YEVERIVDEKLDRNGAVKLYRIRWLNYSSRSDTWEPPENLSGCSAVLAEWKRRKRRLKGS 67
Query: 689 KRERE 703
+ +
Sbjct: 68 NSDSD 72
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 32.7 bits (71), Expect = 0.056
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = +2
Query: 524 ERIMKRRIRKNKVEYYVKWKGWKPKHNTWEPEENILD---PRLIQSFMKGEEVR 676
E ++ R+ K +Y +KW G K+NTW E +L+ + +Q+F E R
Sbjct: 823 EALIGRQKLKKSFQYEIKWFGKPHKYNTWVSREILLENGFQKFVQAFDDMESSR 876
>SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 230
Score = 29.5 bits (63), Expect = 0.52
Identities = 28/80 (35%), Positives = 33/80 (41%), Gaps = 6/80 (7%)
Frame = -2
Query: 404 TAIQIAFFDTTLRSTLSTVQSWRANGPFYGAPRHVFPASYRRAN*SKGKKLSS------R 243
TAI D T + S N YG VFP+ YRRA+ S SS
Sbjct: 13 TAISYLVVDGATPRTFAPSASVSIN---YGTLSTVFPSLYRRASTSSSSSSSSISTSHDS 69
Query: 242 APRTQRSS*MSTERATSSPT 183
P T SS ST ++SS T
Sbjct: 70 QPSTSSSSPSSTSTSSSSGT 89
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1388
Score = 29.1 bits (62), Expect = 0.69
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 563 EYYVKWKGWKPKHNTWEPEENI 628
E+ +KW + H TWEP NI
Sbjct: 215 EFLIKWVNFSHLHCTWEPYNNI 236
Score = 29.1 bits (62), Expect = 0.69
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Frame = +2
Query: 524 ERIMKRRIRKN-KVEYYVKWKGWKPKHNTWEPEENILDP---RLIQSFMKGEE 670
+RI+ + + + VEY VKWK TWE +I++P IQ+F + EE
Sbjct: 291 DRIVAKHLNSDGSVEYLVKWKQLLYDFCTWE-ASSIIEPIAATEIQAFQEREE 342
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 28.3 bits (60), Expect = 1.2
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = +2
Query: 524 ERIMKRRIRKN-KVEYYVKWKGWKPKHNTWEPEENI--LDPRLIQSFMKGE 667
ERI+ + K EY+VKW+ + TWE + I + P + F++ E
Sbjct: 307 ERIVASETNEEGKTEYFVKWRQLPYDNCTWEDADVIYSMAPNEVYQFLQRE 357
Score = 27.9 bits (59), Expect = 1.6
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +2
Query: 551 KNKVEYYVKWKGWKPKHNTWE 613
K+ +Y +KW+ HNTWE
Sbjct: 227 KSSYQYLIKWQEVSHLHNTWE 247
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 27.9 bits (59), Expect = 1.6
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Frame = -3
Query: 433 ILSLHPINEAPQSKSHSSTRHSVQHCPQFKVGARTVLFMERRDTCSPLRIVVQTEVRGRS 254
I+ H I+ S ++ S++ H F+V + VL R +T SP I+ E
Sbjct: 344 IVKPHGISSPKHSTNNLSSKSGKFHS-DFRVVSENVLLQARSETNSP--IIENKEANNFL 400
Query: 253 SPPAH-PARSVPRKCRQS 203
+P ++ PA S P + +S
Sbjct: 401 APTSNVPAYSTPARPTES 418
>SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit
Alp13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 337
Score = 27.1 bits (57), Expect = 2.8
Identities = 9/35 (25%), Positives = 19/35 (54%)
Frame = +2
Query: 527 RIMKRRIRKNKVEYYVKWKGWKPKHNTWEPEENIL 631
+I+ ++ + Y + +KGWK + W ++ IL
Sbjct: 23 KIVDTEMKGDVTTYLIHYKGWKNSWDEWVEQDRIL 57
>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 297
Score = 27.1 bits (57), Expect = 2.8
Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 3/56 (5%)
Frame = -2
Query: 641 AEDPKC-SPPVPTCCASVSTLSISRSTPPCXXXXXXX*CVQRRTRCRLA--PSCAS 483
+E P C S +CC+S S+ C C Q + C + PSC S
Sbjct: 234 SEKPSCCSQEKKSCCSSKKPSCCSQEKKGCCSTEKTSCCSQEKKSCCTSEKPSCCS 289
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.2 bits (55), Expect = 4.9
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -3
Query: 265 RGRSSPPAHPARSVPRKCRQ 206
+GRS+PP P RS P RQ
Sbjct: 356 QGRSAPPPPPPRSAPSTGRQ 375
>SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 500
Score = 25.8 bits (54), Expect = 6.4
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +2
Query: 212 TFTRNAACGVRGRRASSPY-FSLHDDTKRGTRVAALHKKDRSRANFE 349
TF + VR R ++ Y F++H++T +G + LH++ RS + E
Sbjct: 185 TFGDDPLRAVRCIRFATKYDFNIHEETIKGLKNPELHERLRSSISRE 231
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 25.4 bits (53), Expect = 8.5
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Frame = -1
Query: 210 DRARYEFTNARSIFCENPGLE----QISTNDPKYRHKTQPNVVFAKKVCT*FHRD 58
D Y FTN I E+P ++ ++ T++ + NV K + + FH +
Sbjct: 44 DNGEYVFTNKEDINMEDPNVKTDETKVETSESTSEQPSNSNVTEEKNMGSSFHSE 98
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,151,226
Number of Sequences: 5004
Number of extensions: 65507
Number of successful extensions: 203
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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