Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_F10
(738 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_32465| Best HMM Match : Chromo (HMM E-Value=3.5e-16) 83 2e-16
SB_54925| Best HMM Match : MFS_1 (HMM E-Value=4.7e-27) 54 2e-07
SB_39782| Best HMM Match : Chromo_shadow (HMM E-Value=1.4e-23) 53 3e-07
SB_26989| Best HMM Match : Chromo (HMM E-Value=5.5e-10) 46 2e-05
SB_23869| Best HMM Match : rve (HMM E-Value=2.2e-16) 42 4e-04
SB_21158| Best HMM Match : Chromo (HMM E-Value=0.00035) 41 0.001
SB_58697| Best HMM Match : Chromo (HMM E-Value=5.5e-09) 41 0.001
SB_47174| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_28997| Best HMM Match : rve (HMM E-Value=2.3e-10) 38 0.008
SB_56934| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.015
SB_20812| Best HMM Match : rve (HMM E-Value=1.2e-25) 35 0.060
SB_2550| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.14
SB_51384| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.18
SB_48208| Best HMM Match : rve (HMM E-Value=2e-20) 33 0.24
SB_46270| Best HMM Match : rve (HMM E-Value=1.2e-09) 33 0.32
SB_21821| Best HMM Match : MRG (HMM E-Value=0) 33 0.32
SB_37543| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_31644| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0) 29 3.0
SB_38674| Best HMM Match : TIR (HMM E-Value=2.5e-31) 29 3.0
SB_26105| Best HMM Match : Homeobox (HMM E-Value=1.1e-30) 29 3.9
SB_54225| Best HMM Match : 7tm_2 (HMM E-Value=1.9e-22) 29 3.9
SB_45871| Best HMM Match : ABC_tran (HMM E-Value=2.5e-08) 29 3.9
SB_36850| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_15534| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_14271| Best HMM Match : Pkinase (HMM E-Value=2.1e-27) 28 9.1
SB_25931| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
SB_18929| Best HMM Match : BRCT (HMM E-Value=1.4e-08) 28 9.1
SB_18195| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
>SB_32465| Best HMM Match : Chromo (HMM E-Value=3.5e-16)
Length = 411
Score = 83.0 bits (196), Expect = 2e-16
Identities = 35/86 (40%), Positives = 56/86 (65%)
Frame = +2
Query: 461 GLPPIKLGMHKMELGDSVFAAERIMKRRIRKNKVEYYVKWKGWKPKHNTWEPEENILDPR 640
G I + M+K ++AAE I+K R+R KV Y++KWKG+ ++NTWEPEEN+LDPR
Sbjct: 7 GFAFISINMNKGGRAAGIYAAETILKERVRDGKVWYFIKWKGYSQRYNTWEPEENVLDPR 66
Query: 641 LIQSFMKGEEVRRQGRKREREHSSVE 718
L++++ + + + KR++ S E
Sbjct: 67 LLKAYQERLALSEKKVKRKKVKPSTE 92
>SB_54925| Best HMM Match : MFS_1 (HMM E-Value=4.7e-27)
Length = 1373
Score = 53.6 bits (123), Expect = 2e-07
Identities = 22/57 (38%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Frame = +2
Query: 524 ERIMKRRIRKNKVEYYVKWKGWKPKHNTWEPEENILD-PRLIQSFMKGEEVRRQGRK 691
E+I+ RR+++ KVEY V+WKG+ P +TWEP +N+ LI +F+ + R+
Sbjct: 908 EKILDRRVQRGKVEYLVRWKGYGPADDTWEPSKNLKGCKELIDNFLNSATSTKSRRR 964
>SB_39782| Best HMM Match : Chromo_shadow (HMM E-Value=1.4e-23)
Length = 226
Score = 52.8 bits (121), Expect = 3e-07
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Frame = +2
Query: 515 FAAERIMKRRIRKNKVEYYVKWKGWKPKHNTWEPEENILDPRLIQSFMKGEEV--RRQGR 688
+ E++M +R+ +EY +KWKG+ NTWE EE + P LI+ + K ++ +R+
Sbjct: 28 YEVEKVMDKRVINGGIEYLLKWKGYPDSENTWESEEGLQCPELIEEYEKKKKASSKRKDS 87
Query: 689 KREREHSSVERAR 727
E+ S ++ +
Sbjct: 88 TSEKGESKPKKRK 100
>SB_26989| Best HMM Match : Chromo (HMM E-Value=5.5e-10)
Length = 517
Score = 46.4 bits (105), Expect = 2e-05
Identities = 22/61 (36%), Positives = 39/61 (63%), Gaps = 2/61 (3%)
Frame = +2
Query: 527 RIMKRRIRKNKVEYY-VKWKGWKPKHNTWEPEENILD-PRLIQSFMKGEEVRRQGRKRER 700
R+ + + ++ V Y+ V+WKG+ P +TWEPEEN+ + +++ F K RR+ R+R R
Sbjct: 5 RLTETFVAQDGVRYFKVRWKGYTPDDDTWEPEENVFECEDVLEEFWKR---RRRNRERRR 61
Query: 701 E 703
+
Sbjct: 62 Q 62
>SB_23869| Best HMM Match : rve (HMM E-Value=2.2e-16)
Length = 1456
Score = 42.3 bits (95), Expect = 4e-04
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +2
Query: 515 FAAERIMKRRIRKNKVEYYVKWKGWKPKHNTWEPEENI 628
F +R++K R + EY+V WKGW K+N+W P +
Sbjct: 1227 FKIDRVLKTWKRGGRGEYWVHWKGWPDKYNSWVPATEV 1264
>SB_21158| Best HMM Match : Chromo (HMM E-Value=0.00035)
Length = 132
Score = 41.1 bits (92), Expect = 0.001
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Frame = +2
Query: 491 KMELGDSVFAAERIMKRRI--RKNKVEYYVKWKGWKPKHNTWEPEENILDPRLIQSFM 658
K + G V+ ERI+ +RI R EY VKWK W +T EP N L LI+S++
Sbjct: 33 KYKSGSKVYDVERIISQRITSRNGDKEYLVKWKNWPIWTSTLEP-ANHLTEALIRSYL 89
>SB_58697| Best HMM Match : Chromo (HMM E-Value=5.5e-09)
Length = 590
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/50 (38%), Positives = 25/50 (50%)
Frame = +2
Query: 506 DSVFAAERIMKRRIRKNKVEYYVKWKGWKPKHNTWEPEENILDPRLIQSF 655
D +F ++++ R R EY V W TWEP NILD RLI +
Sbjct: 398 DGIFIVKKLLNCRRRSKTTEYLVLWSD---DSQTWEPRHNILDKRLITHY 444
>SB_47174| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1198
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/50 (38%), Positives = 25/50 (50%)
Frame = +2
Query: 506 DSVFAAERIMKRRIRKNKVEYYVKWKGWKPKHNTWEPEENILDPRLIQSF 655
D +F ++++ R R EY V W TWEP NILD RLI +
Sbjct: 967 DGIFIVKKLLNCRRRSKTTEYLVLWSD---DSQTWEPRHNILDKRLITHY 1013
>SB_28997| Best HMM Match : rve (HMM E-Value=2.3e-10)
Length = 1847
Score = 37.9 bits (84), Expect = 0.008
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +2
Query: 515 FAAERIMKRRIRKNKVEYYVKWKGWKPKHNTWEPEENI 628
F + ++K R R + Y+V WKGW K+ +W P +
Sbjct: 1076 FKIDSVVKTRKRGGRKVYWVHWKGWPDKYKSWVPATEV 1113
>SB_56934| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2541
Score = 37.1 bits (82), Expect = 0.015
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +2
Query: 518 AAERIMKRRIRKN-KVEYYVKWKGWKPKHNTWEPEENI 628
A I+ RRI ++ K EY V WK +K +TWEP EN+
Sbjct: 23 AINEIIGRRITQSGKEEYLVHWKKYKVWESTWEPLENL 60
>SB_20812| Best HMM Match : rve (HMM E-Value=1.2e-25)
Length = 1097
Score = 35.1 bits (77), Expect = 0.060
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +2
Query: 515 FAAERIMKRRIRKNKVEYYVKWKGWKPK 598
F +R++K R R + EY+V WKGW K
Sbjct: 627 FKIDRVLKTRKRGGRDEYWVHWKGWPDK 654
>SB_2550| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 929
Score = 33.9 bits (74), Expect = 0.14
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +2
Query: 512 VFAAERIMKRRIRKNKVEYYVKWKGWKPKHNTWE 613
+F ER+++ R + EY+V+W+GW P +N E
Sbjct: 384 LFRIERVIRTRGKGRNEEYFVQWRGW-PDNNALE 416
>SB_51384| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 429
Score = 33.5 bits (73), Expect = 0.18
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +2
Query: 563 EYYVKWKGWKPKHNTWEP 616
+Y+V WKGW K+N+W P
Sbjct: 103 KYWVHWKGWPNKYNSWVP 120
>SB_48208| Best HMM Match : rve (HMM E-Value=2e-20)
Length = 1557
Score = 33.1 bits (72), Expect = 0.24
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +2
Query: 512 VFAAERIMKRRIRKNKVEYYVKWKGWKPKHNTWE 613
+F ER+++ R + EY+V+W+GW P +N E
Sbjct: 358 LFRIERVIRTRGKGRYEEYFVQWRGW-PDNNALE 390
>SB_46270| Best HMM Match : rve (HMM E-Value=1.2e-09)
Length = 657
Score = 32.7 bits (71), Expect = 0.32
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +2
Query: 512 VFAAERIMKRRIRKNKVEYYVKWKGWKPKHN 604
+F ER+++ R + EY+V+W+GW P +N
Sbjct: 383 LFRIERVIRTRGKGRNEEYFVQWRGW-PDNN 412
>SB_21821| Best HMM Match : MRG (HMM E-Value=0)
Length = 292
Score = 32.7 bits (71), Expect = 0.32
Identities = 16/74 (21%), Positives = 34/74 (45%)
Frame = +2
Query: 503 GDSVFAAERIMKRRIRKNKVEYYVKWKGWKPKHNTWEPEENILDPRLIQSFMKGEEVRRQ 682
G ++ A+ I + ++++ Y + + GW + W PE +L + K E+R Q
Sbjct: 18 GPLIYEAKCI-RGQLKEKTARYLIHYNGWNKNWDEWVPESRVLKYN-DANLQKQRELREQ 75
Query: 683 GRKREREHSSVERA 724
K ++ E++
Sbjct: 76 NLKSKKARKKQEKS 89
>SB_37543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 30.3 bits (65), Expect = 1.7
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +2
Query: 512 VFAAERIMKRRIRKNKVEYYVKWKGW 589
+F ER+++ + + EY+V+W+GW
Sbjct: 374 LFRIERVIRTQGKGRNEEYFVQWRGW 399
>SB_31644| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 935
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = -3
Query: 346 KVGARTVLFMERRDTCSPLRIVVQTEVRGRSSPPAHPARSVPRKC 212
+V T+L + RR CSPL+++V ++R S PP P C
Sbjct: 661 EVNNMTLLSISRR--CSPLQVLVMKKLRRSSIPPKTERHKNPDTC 703
>SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
Length = 829
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Frame = +2
Query: 557 KVEYYVKWKGWKPKHNTWEPEENILDPRL----IQSFMK 661
+V YY W ++PK T+ PE+ +DP L I SF K
Sbjct: 408 RVCYYTNWSQYRPKGGTFWPED--IDPHLCTHVIHSFSK 444
>SB_38674| Best HMM Match : TIR (HMM E-Value=2.5e-31)
Length = 870
Score = 29.5 bits (63), Expect = 3.0
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Frame = -1
Query: 315 SAATRVPRFVSSCKLK*GEEALLPRTPHAAFLVNVDRARYEF-----TNARSIFCENPGL 151
S ++P F + C++K G E L P L N +Y ++ R IFC +P +
Sbjct: 49 SPTGQIPMFFTKCEIKGGAECSLDLGPWIQPLANSSTVQYYLAIVCRSSTRIIFCNSPEV 108
Query: 150 EQ 145
++
Sbjct: 109 KR 110
>SB_26105| Best HMM Match : Homeobox (HMM E-Value=1.1e-30)
Length = 315
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +2
Query: 200 RALSTFTRNAACGVRGRRASSPYFSLHDDTK 292
RA S F+R +ACG + LHDD K
Sbjct: 209 RAFSAFSRTSACGSSTKDGEIVVSGLHDDNK 239
>SB_54225| Best HMM Match : 7tm_2 (HMM E-Value=1.9e-22)
Length = 431
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = -1
Query: 426 HCIQLMRHRNPNRILRHDTPFNTVHSSKLARERSFLWSAATRV 298
H + L+ H NP +L+ + H+SK++ SF+ T +
Sbjct: 116 HVLSLVLHPNPRSVLKKNVTMTFDHNSKISPTDSFVLDLLTYI 158
>SB_45871| Best HMM Match : ABC_tran (HMM E-Value=2.5e-08)
Length = 435
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/64 (26%), Positives = 29/64 (45%)
Frame = +1
Query: 34 VGRSLSLAVPVKLSTDFLSEYYVWLCFMSIFGIISRNLF*PWILTEYRAGVGELVARSVD 213
+G+ +S VP +T E Y++ MSIF + + P +R G +A S
Sbjct: 374 IGKLVSYFVPGSTTTK--QEAYIYAAIMSIFSCVMAMVHHPLFFQTFRCGFHLRIACSTM 431
Query: 214 IYEE 225
+Y +
Sbjct: 432 VYRK 435
>SB_36850| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1008
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -3
Query: 445 PINVILSLHPINEAPQSKSHSSTRHSVQHCPQFKV 341
P N I SL P S S +S + S+ HC F++
Sbjct: 170 PTNPIPSLRQPKNIPLSTSVTSAKSSLDHCTSFQI 204
>SB_15534| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1041
Score = 28.3 bits (60), Expect = 6.9
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Frame = -3
Query: 451 CNPINVILSLHPINEAPQSKSHSSTRHSVQHCPQFKVGARTVLFMERRDTCSPLRI-VVQ 275
C + ++ +++AP+++SHS +H H P K G + +R + ++
Sbjct: 214 CEDLELVKYNLNLDKAPKAQSHS--QHGNMHTPLTK-GKLVNSYKDRFEGLGAFKMRPYH 270
Query: 274 TEVRGRSSPPAHPARSVPRKCRQ 206
+ + P HP RSVP R+
Sbjct: 271 ITLEEGAEPVIHPPRSVPVHLRE 293
>SB_14271| Best HMM Match : Pkinase (HMM E-Value=2.1e-27)
Length = 2056
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -2
Query: 521 RRTRCRLAPSCASPV*SVVIQKTLQSNKC 435
RRTRC+ C SP + + K+ + N+C
Sbjct: 1452 RRTRCQGVKVCDSPSCTYTVSKSQRRNRC 1480
>SB_25931| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 988
Score = 27.9 bits (59), Expect = 9.1
Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 9/69 (13%)
Frame = +2
Query: 503 GDSVFAAERIMKRRIRKNKVE-YYVKW------KGWKPKHNTWEPEENI--LDPRLIQSF 655
G V ERI+K R +NKVE Y V+W + +P T E E + P + Q F
Sbjct: 425 GPDVVRPERIIKSR-TQNKVECYEVQWINCGLGESCEPTFTTIETRELVRAAYPDVAQQF 483
Query: 656 MKGEEVRRQ 682
E+ RRQ
Sbjct: 484 EDAEQDRRQ 492
>SB_18929| Best HMM Match : BRCT (HMM E-Value=1.4e-08)
Length = 1213
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Frame = -3
Query: 301 CSPLRIVVQTEVRGRSSPP---AHPARSVPRKCRQSALRVHQRP 179
C+ LRI + R SPP H + ++CR ALR+ +P
Sbjct: 1071 CTFLRIAGVCMLVSRPSPPQECGHVCSRLTKRCRPPALRLRDKP 1114
>SB_18195| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 393
Score = 27.9 bits (59), Expect = 9.1
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +2
Query: 563 EYYVKWKGWKPKHNTWEP 616
+Y +KWK W + +WEP
Sbjct: 156 QYLIKWKDWPLQFCSWEP 173
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,983,657
Number of Sequences: 59808
Number of extensions: 560854
Number of successful extensions: 1906
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1904
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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