Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_F10
(738 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g17690.1 68418.m02073 like heterochromatin protein (LHP1) ide... 63 2e-10
At2g44760.1 68415.m05571 expressed protein 31 0.60
At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding famil... 31 0.80
At2g13370.1 68415.m01476 chromodomain-helicase-DNA-binding famil... 31 1.1
At1g69770.1 68414.m08028 chromomethylase 3 (CMT3) nearly identic... 30 1.4
At4g37280.1 68417.m05276 MRG family protein contains Pfam domain... 30 1.8
At4g19020.1 68417.m02803 chromomethylase 2 (CMT2) nearly identic... 30 1.8
At3g19430.1 68416.m02464 late embryogenesis abundant protein-rel... 29 3.2
At4g31900.1 68417.m04533 chromatin remodeling factor, putative s... 29 4.3
At3g42800.1 68416.m04480 expressed protein hypothetical proteins... 29 4.3
At2g47450.1 68415.m05922 chloroplast signal recognition particle... 29 4.3
At2g28240.1 68415.m03428 hydroxyproline-rich glycoprotein family... 29 4.3
At1g80740.1 68414.m09473 chromomethylase 1 (CMT1) identical to c... 29 4.3
At2g25170.1 68415.m03010 chromatin remodeling factor CHD3 (PICKL... 28 5.6
At5g55280.1 68418.m06889 cell division protein FtsZ, chloroplast... 28 7.4
At3g25130.1 68416.m03138 expressed protein 28 7.4
At2g47980.1 68415.m06004 expressed protein 28 7.4
At1g49980.1 68414.m05609 UMUC-like DNA repair family protein low... 28 7.4
At5g13000.1 68418.m01490 glycosyl transferase family 48 protein ... 27 9.8
At4g15270.1 68417.m02339 glucosyltransferase-related contains so... 27 9.8
At2g11890.1 68415.m01276 expressed protein 27 9.8
>At5g17690.1 68418.m02073 like heterochromatin protein (LHP1)
identical to like heterochromatin protein LHP1
[Arabidopsis thaliana] GI:15625407; contains Pfam
profile PF00385: 'chromo' (CHRromatin Organization
MOdifier)
Length = 445
Score = 63.3 bits (147), Expect = 2e-10
Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Frame = +2
Query: 497 ELGDSVFAAERIMKRRIRKNKVEYYVKWKGWKPKHNTWEPEENILD-PRLIQSFMKGEEV 673
+L + + E I ++R+RK KV+Y +KW+GW NTWEP EN+ +I +F +
Sbjct: 102 KLDEGFYEIEAIRRKRVRKGKVQYLIKWRGWPETANTWEPLENLQSIADVIDAFEGSLKP 161
Query: 674 RRQGRKREREHS 709
+ GRKR+R+++
Sbjct: 162 GKPGRKRKRKYA 173
>At2g44760.1 68415.m05571 expressed protein
Length = 504
Score = 31.5 bits (68), Expect = 0.60
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -1
Query: 666 SPFMKLCMS-RGSKMFSSGSHVLCFGFH 586
SPF+ LC S S S +H +CFGFH
Sbjct: 9 SPFLHLCKSFTSSSPLSCHNHNICFGFH 36
>At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding family
protein / CHD family protein similar to chromatin
remodeling factor CHD3 (PICKLE) [Arabidopsis thaliana]
GI:6478518; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain, PF00628: PHD-finger, PF00385:
'chromo' (CHRromatin Organization MOdifier)
Length = 2228
Score = 31.1 bits (67), Expect = 0.80
Identities = 34/103 (33%), Positives = 45/103 (43%), Gaps = 15/103 (14%)
Frame = +2
Query: 407 LINWMQ*QD-HIYWI--AVFFGLPPIKLGMHKMELGDSVF--------AAERIMKRRIRK 553
L+ W+ + H WI A GL KL +K + G +V +RI+ R+ K
Sbjct: 540 LVKWVDKSNIHNTWISEAELKGLAKRKLENYKAKYGTAVINICEDKWKQPQRIVALRVSK 599
Query: 554 N-KVEYYVKWKGWKPKHNTWEP-EENIL--DPRLIQSFMKGEE 670
E YVKW G TWE EE IL LI F + E+
Sbjct: 600 EGNQEAYVKWTGLAYDECTWESLEEPILKHSSHLIDLFHQYEQ 642
>At2g13370.1 68415.m01476 chromodomain-helicase-DNA-binding family
protein / CHD family protein similar to SP|O14647
Chromodomain-helicase-DNA-binding protein 2 (CHD-2)
{Homo sapiens}; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain, PF00385: 'chromo' (CHRromatin
Organization MOdifier)
Length = 1722
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = +2
Query: 521 AERIMKRRIRKNKVEYYVKWKGWKPKHNTWEPEENILDPRLIQSFMKGEEV--RRQGRKR 694
A+RI K + EY VKW+G TWE + +I ++ K EV QG+
Sbjct: 540 ADRISKDGLGDVVPEYLVKWQGLSYAEATWEKDVDIAFAQVAIDEYKAREVSIAVQGKMV 599
Query: 695 EREHS 709
E++ +
Sbjct: 600 EQQRT 604
>At1g69770.1 68414.m08028 chromomethylase 3 (CMT3) nearly identical
to chromomethylase CMT3 [Arabidopsis thaliana]
GI:14583092, GI:14647157
Length = 839
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +2
Query: 539 RRIRKNKVEYYVKWKGWKPKHNTWEPEENILDPR-LIQSFMK 661
+++ K + V+W + H+TWEP E + + R I+ F+K
Sbjct: 396 KKLLKRGLYLKVRWLNYDDSHDTWEPIEGLSNCRGKIEEFVK 437
>At4g37280.1 68417.m05276 MRG family protein contains Pfam domain
PF05712: MRG
Length = 320
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +2
Query: 503 GDSVFAAERIMKRRIRKNKVEYYVKWKGWKPKHNTWEPEENIL 631
G V+ A ++ K +RK + +Y+V + GW + W + +L
Sbjct: 40 GPRVYGA-KVQKVELRKKEWKYFVHYLGWNKNWDEWVSADRLL 81
>At4g19020.1 68417.m02803 chromomethylase 2 (CMT2) nearly identical
to chromomethylase CMT2 [Arabidopsis thaliana]
GI:14583094
Length = 1295
Score = 29.9 bits (64), Expect = 1.8
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +2
Query: 551 KNKVEYYVKWKGWKPKHNTWEPEENI 628
KN +++ V WKG++ +TWE E +
Sbjct: 855 KNGLKFKVHWKGYRSDEDTWELAEEL 880
>At3g19430.1 68416.m02464 late embryogenesis abundant
protein-related / LEA protein-related similar to late
embryogenesis abundant protein [Picea glauca] GI:1350543
Length = 559
Score = 29.1 bits (62), Expect = 3.2
Identities = 20/53 (37%), Positives = 26/53 (49%)
Frame = -2
Query: 716 PRTSVPARVSDPGAGPPRLS*NSV*AEDPKCSPPVPTCCASVSTLSISRSTPP 558
P SVP+ + P + PP SV + P SPP PT SV + + S PP
Sbjct: 86 PTPSVPSP-TPPVSPPPPTPTPSVPSPTPPVSPPPPTPTPSVPSPTPPVSPPP 137
Score = 29.1 bits (62), Expect = 3.2
Identities = 20/53 (37%), Positives = 26/53 (49%)
Frame = -2
Query: 716 PRTSVPARVSDPGAGPPRLS*NSV*AEDPKCSPPVPTCCASVSTLSISRSTPP 558
P SVP+ + P + PP SV + P SPP PT SV + + S PP
Sbjct: 104 PTPSVPSP-TPPVSPPPPTPTPSVPSPTPPVSPPPPTPTPSVPSPTPPVSPPP 155
>At4g31900.1 68417.m04533 chromatin remodeling factor, putative
strong similarity to chromatin remodeling factor CHD3
(PICKLE) [Arabidopsis thaliana] GI:6478518; contains
Pfam profiles PF00271: Helicase conserved C-terminal
domain, PF00176: SNF2 family N-terminal domain
Length = 1202
Score = 28.7 bits (61), Expect = 4.3
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 563 EYYVKWKGWKPKHNTWEPEE 622
+Y VKWKG H +W PE+
Sbjct: 78 QYLVKWKGLSYLHCSWVPEQ 97
Score = 28.3 bits (60), Expect = 5.6
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +2
Query: 524 ERIMKRRIRKNKVEYYVKWKGWKPKHNTWEPEENILD-PRLIQSFMKGEEVRRQGRKRER 700
+RI+ R + EY VK+K +++ WE E +I D IQ F R+ + E
Sbjct: 145 DRIIACREGDDGEEYLVKYKELSYRNSYWESESDISDFQNEIQRFKDINSSSRRDKYVEN 204
Query: 701 EHSSVE 718
E + E
Sbjct: 205 ERNREE 210
>At3g42800.1 68416.m04480 expressed protein hypothetical proteins -
Arabidopsis thaliana; expression supported by MPSS
Length = 341
Score = 28.7 bits (61), Expect = 4.3
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 120 DIWDH*SKSVLTLDSHRISSGRW 188
D W H S + LDS+RI GR+
Sbjct: 295 DAWSHSSSDLFELDSYRIGMGRY 317
>At2g47450.1 68415.m05922 chloroplast signal recognition particle
component (CAO) nearly identical to CAO [Arabidopsis
thaliana] GI:4102582
Length = 373
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +2
Query: 521 AERIMKRRIRKN--KVEYYVKWKGWKPKHNTWEPEENI 628
AE ++ +R+ + +EY VKW TWEP++N+
Sbjct: 322 AESVIGKRVGDDGKTIEYLVKWTDMSDA--TWEPQDNV 357
>At2g28240.1 68415.m03428 hydroxyproline-rich glycoprotein family
protein
Length = 660
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/41 (39%), Positives = 18/41 (43%)
Frame = -2
Query: 725 ARAPRTSVPARVSDPGAGPPRLS*NSV*AEDPKCSPPVPTC 603
A PR SV A PPR S + A P S P+P C
Sbjct: 329 AAPPRPSVTAAEPMNSTAPPRPSVTAAEATPPNLSAPLPHC 369
>At1g80740.1 68414.m09473 chromomethylase 1 (CMT1) identical to
chromomethylase GB:AAC02660 GI:2865416 from [Arabidopsis
thaliana]
Length = 791
Score = 28.7 bits (61), Expect = 4.3
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +2
Query: 560 VEYYVKWKGWKPKHNTWEP 616
++ V+WKG+ ++TWEP
Sbjct: 360 LQLMVRWKGYNSSYDTWEP 378
>At2g25170.1 68415.m03010 chromatin remodeling factor CHD3 (PICKLE)
identical to chromatin remodeling factor CHD3
[Arabidopsis thaliana] GI:6478518
Length = 1384
Score = 28.3 bits (60), Expect = 5.6
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 563 EYYVKWKGWKPKHNTWEPEE 622
+Y VKWKG H +W PE+
Sbjct: 130 QYLVKWKGLSYLHCSWVPEK 149
>At5g55280.1 68418.m06889 cell division protein FtsZ, chloroplast,
putative (FTSZ) identical to SP|Q42545 Cell division
protein ftsZ homolog, chloroplast precursor {Arabidopsis
thaliana}; similar to FtsZ1 [Tagetes erecta] GI:8896066;
contains Pfam profiles PF00091: Tubulin/FtsZ family,
GTPase domain, PF03953: Tubulin/FtsZ family, C-terminal
domain
Length = 433
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +2
Query: 89 ANTTFGCVLC-RYLGSLVEICSNPGFSQNIERALVNS*RALSTFTRNAACGVRGRRASS 262
AN FG V+ RY G + GFSQ+ ++ L+ RA + + G + + S
Sbjct: 352 ANIIFGAVVDDRYTGEIHVTIIATGFSQSFQKTLLTDPRAAKLLDKMGSSGQQENKGMS 410
>At3g25130.1 68416.m03138 expressed protein
Length = 406
Score = 27.9 bits (59), Expect = 7.4
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 378 VEECDLDCGASLIGCSDRITFIGLQC 455
VE C ++C + CSD +TF+ C
Sbjct: 131 VEACSMECASENEICSDELTFVDKFC 156
>At2g47980.1 68415.m06004 expressed protein
Length = 1098
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +2
Query: 584 GWKPKHNTWEP-EENILDPRLIQSFMKGEEVRRQGRKREREHSSVER 721
GW+P E EE L +Q + VRR+GR R+R + +R
Sbjct: 1001 GWRPCFTFLETLEEKCLKNEDLQDDKEAANVRRRGRPRKRPETERKR 1047
>At1g49980.1 68414.m05609 UMUC-like DNA repair family protein low
similarity to DNA polymerase kappa [Mus musculus]
GI:14279087; contains Pfam profile PF00817:
ImpB/MucB/SamB family
Length = 785
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 645 YRVS*KARRSGARVGNASGNTRPWSAR 725
+RV+ K +G VG A G RPW R
Sbjct: 643 FRVTGKNADTGGEVGRAEGVVRPWFGR 669
>At5g13000.1 68418.m01490 glycosyl transferase family 48 protein
contains Pfam profile: PF02364 1,3-beta-glucan synthase
Length = 1889
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/45 (22%), Positives = 21/45 (46%)
Frame = +2
Query: 272 SLHDDTKRGTRVAALHKKDRSRANFELWTVLNGVSCRRMRFGLRC 406
++H+D G + L+ ++ SR LW V+ + + + C
Sbjct: 1233 AMHEDLMEGYKAVELNSENNSRGERSLWAQCQAVADMKFTYVVSC 1277
>At4g15270.1 68417.m02339 glucosyltransferase-related contains some
similarity to glucosyltransferase GI:14349251 from
[Nicotiana tabacum]
Length = 311
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 263 PYFSLHDDTKRGTRVAALHKKDRSRANFELWTVLN 367
PY S+ DD T +A+L + R N+E +V N
Sbjct: 41 PYPSISDDDVETTYIASLTTASQDRLNYEAISVAN 75
>At2g11890.1 68415.m01276 expressed protein
Length = 210
Score = 27.5 bits (58), Expect = 9.8
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = -1
Query: 219 VNVDRARYEFTNARSIFCENPGLEQISTNDPKYRHKTQPNVVFAKKVCT*FHRDRERKRP 40
+ VD +Y+F N I CE E++ T ++ T+ + F+ T F R K P
Sbjct: 153 LEVDETKYDFGNCYEIECETEEPERVKTMIEEF--LTEEKIEFSNSDMTKFAVFRSGKLP 210
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,003,514
Number of Sequences: 28952
Number of extensions: 369339
Number of successful extensions: 1150
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1092
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1148
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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