Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_F08
         (746 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskel...    31   0.050
AY263177-1|AAP78792.1|  699|Anopheles gambiae TmcC-like protein ...    24   5.7  
M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles ...    23   7.6  

>CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskeletal
            structural protein protein.
          Length = 1645

 Score = 30.7 bits (66), Expect = 0.050
 Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +1

Query: 169  SRARPG-DGLRAAHQAGHARLRVGPRHQTKHPAETGVEVGASRALRISARTNAR 327
            S A PG DG  AA   G A        Q     ETG+  G S  LR++ +T+AR
Sbjct: 1507 SEAPPGTDGAAAAPTGGAAVTNATSILQVYAAYETGLPSGTSLKLRVTPKTSAR 1560


>AY263177-1|AAP78792.1|  699|Anopheles gambiae TmcC-like protein
           protein.
          Length = 699

 Score = 23.8 bits (49), Expect = 5.7
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = -3

Query: 423 AWASSTSMWSRGVPRGSASNARSRCPTVESTRARVCSRGDT*GARGAN 280
           +W SS S++S    RG+ S A +  P + S    V + G   G+ G N
Sbjct: 201 SWPSSWSVFSSASQRGAISFASTITPLLSSISDEVGAGGG--GSGGFN 246


>M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles
            gambiae RT2 retroposon. ).
          Length = 1222

 Score = 23.4 bits (48), Expect = 7.6
 Identities = 17/37 (45%), Positives = 20/37 (54%)
 Frame = +1

Query: 94   LQVHLQRDAVDARGLGEGAVRAAAESRARPGDGLRAA 204
            LQ HL RDA     + EGA R  A+ + R  D  RAA
Sbjct: 1045 LQRHLLRDADSWSRICEGAKRITAQLQ-RAWDEERAA 1080


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 611,071
Number of Sequences: 2352
Number of extensions: 13403
Number of successful extensions: 35
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 76923555
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)