Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_F07
         (703 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36998| Best HMM Match : TUDOR (HMM E-Value=0)                       29   2.8  
SB_58212| Best HMM Match : 7tm_1 (HMM E-Value=1.7e-38)                 28   6.4  

>SB_36998| Best HMM Match : TUDOR (HMM E-Value=0)
          Length = 2538

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 7/61 (11%)
 Frame = -3

Query: 347  MCVLGRANGDPSWWKRKPASLERNKS-------GNSKTCQHLSAKMIANEFS*LHDKLFF 189
            +C   R   D SW++ +   + RN         GNS+T  +   KM+A++F+ L +++  
Sbjct: 921  VCCAARYTEDDSWYRARILEVSRNTVTVQYIDYGNSETLPNNRLKMLASKFAELPEQVVP 980

Query: 188  C 186
            C
Sbjct: 981  C 981


>SB_58212| Best HMM Match : 7tm_1 (HMM E-Value=1.7e-38)
          Length = 352

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -3

Query: 416 LLCQTDLLVCYFYIMT*RNKEM*MCVLGRA-NGDPSWWKRKPASL 285
           LLC   +L CYF I+        +C  G+A NGD    KRK   L
Sbjct: 195 LLCSITMLYCYFNIIKGLYFTQTICSRGQAPNGDERAAKRKIVKL 239


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,133,882
Number of Sequences: 59808
Number of extensions: 394225
Number of successful extensions: 587
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)