Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_F06
         (775 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g40300.1 68415.m04964 ferritin, putative similar to ferritin ...    35   0.052
At3g56090.1 68416.m06234 ferritin, putative similar to ferritin ...    35   0.069
At5g01600.1 68418.m00075 ferritin 1 (FER1) identical to ferritin...    32   0.37 
At5g17220.1 68418.m02018 glutathione S-transferase, putative           30   1.5  
At2g44630.1 68415.m05555 kelch repeat-containing F-box family pr...    29   2.6  
At3g11050.1 68416.m01333 ferritin, putative similar to ferritin ...    29   3.4  
At2g31960.1 68415.m03905 glycosyl transferase family 48 protein ...    28   6.0  
At2g06200.1 68415.m00682 expressed protein                             28   6.0  

>At2g40300.1 68415.m04964 ferritin, putative similar to ferritin
           subunit cowpea2 precursor [Vigna unguiculata]
           GI:2970654; contains Pfam profile PF00210: Ferritin-like
           domain
          Length = 259

 Score = 35.1 bits (77), Expect = 0.052
 Identities = 25/104 (24%), Positives = 47/104 (45%)
 Frame = +3

Query: 441 SYHYLLSASYFNNYQTNREGFAKLFRKLSDDSWEKTIGLIKHVTKRGGKMDFSSHTTLKG 620
           SY Y    +YF+      +G AK F++ S +  E    L+++  KRGG++   S   +  
Sbjct: 112 SYVYHAMYAYFDRDNIALKGLAKFFKESSLEEREHAEKLMEYQNKRGGRVKLQS---IVM 168

Query: 621 DKGSNYTVEVGHEIGALAKALDTXXQLAXRIFFIHREVTKNSDL 752
                  V+ G  +  +  AL     +  ++  +H   +KN+D+
Sbjct: 169 PLSEFEHVDKGDALYGMELALSLEKLVNEKLLNLHSVASKNNDV 212


>At3g56090.1 68416.m06234 ferritin, putative similar to ferritin
           subunit cowpea2 precursor [Vigna unguiculata]
           GI:2970654; contains Pfam profile PF00210: Ferritin-like
           domain
          Length = 259

 Score = 34.7 bits (76), Expect = 0.069
 Identities = 25/104 (24%), Positives = 46/104 (44%)
 Frame = +3

Query: 441 SYHYLLSASYFNNYQTNREGFAKLFRKLSDDSWEKTIGLIKHVTKRGGKMDFSSHTTLKG 620
           SY Y    +YF+      +G AK F++ S +  E    L+++  KRGG++        + 
Sbjct: 110 SYVYHALYAYFDRDNVALKGLAKFFKESSVEEREHAELLMEYQNKRGGRVKLQPMVLPQS 169

Query: 621 DKGSNYTVEVGHEIGALAKALDTXXQLAXRIFFIHREVTKNSDL 752
           +       E G  + A+  AL     +  ++  +H   +KN D+
Sbjct: 170 EFDH---PEKGDALYAMELALSLEKLVNEKLLNLHSVASKNDDV 210


>At5g01600.1 68418.m00075 ferritin 1 (FER1) identical to ferritin
           [Arabidopsis thaliana] GI:1246401, GI:8163920
          Length = 255

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 32/151 (21%), Positives = 66/151 (43%), Gaps = 4/151 (2%)
 Frame = +3

Query: 309 YQNVDQGCRRTLSLP---HCSAYYGQFKD-NHVVANELKALASLYLKRSYHYLLSASYFN 476
           +Q  ++  +  L++P   H S    +F D +  V NE     ++    SY Y    +YF+
Sbjct: 64  FQPFEEVKKADLAIPITSHASLARQRFADASEAVINEQ---INVEYNVSYVYHSMYAYFD 120

Query: 477 NYQTNREGFAKLFRKLSDDSWEKTIGLIKHVTKRGGKMDFSSHTTLKGDKGSNYTVEVGH 656
                 +G AK F++ S++        +++  +RGG++    H  +       +  E G 
Sbjct: 121 RDNVAMKGLAKFFKESSEEERGHAEKFMEYQNQRGGRVKL--HPIVSPISEFEH-AEKGD 177

Query: 657 EIGALAKALDTXXQLAXRIFFIHREVTKNSD 749
            + A+  AL        ++  +H+  ++N+D
Sbjct: 178 ALYAMELALSLEKLTNEKLLNVHKVASENND 208


>At5g17220.1 68418.m02018 glutathione S-transferase, putative
          Length = 214

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = +3

Query: 366 YYGQFKDNHVVANELKALASLYLKRSYHYLLSASYFNNYQTNREGFAKLFRKLSD-DSWE 542
           Y  +   N  +A E   +A L    +  YL+S +  N     R  F + + ++SD  SW+
Sbjct: 147 YNNRLSSNRFLAGEEFTMADLTHMPAMGYLMSITDINQMVKARGSFNRWWEEISDRPSWK 206

Query: 543 KTIGLIKH 566
           K + L  H
Sbjct: 207 KLMVLAGH 214


>At2g44630.1 68415.m05555 kelch repeat-containing F-box family
           protein similar to SKP1 interacting partner 6
           [Arabidopsis thaliana] GI:10716957; contains Pfam
           profiles PF00646: F-box domain, PF01344: Kelch motif
          Length = 372

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/49 (36%), Positives = 27/49 (55%)
 Frame = +3

Query: 402 NELKALASLYLKRSYHYLLSASYFNNYQTNREGFAKLFRKLSDDSWEKT 548
           NE    AS+ L R  + L S  Y N+Y T R+G  + +  + +D+W KT
Sbjct: 218 NEWFTHASVSLDRKVYALNSREYMNSYDT-RDGSYQRY-TIPEDNWWKT 264


>At3g11050.1 68416.m01333 ferritin, putative similar to ferritin
           subunit cowpea2 precursor GI:2970654 (Vigna
           unguiculata); contains Pfam profile PF00210:
           Ferritin-like domain
          Length = 253

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = +3

Query: 441 SYHYLLSASYFNNYQTNREGFAKLFRKLSDDSWEKTIGLIKHVTKRGGKMDFSS 602
           SY Y    +YF+      +GFAK F   S +        +++  KRGG++   S
Sbjct: 104 SYVYHALYAYFDRDNVGLKGFAKFFNDSSLEERGHAEMFMEYQNKRGGRVKLQS 157


>At2g31960.1 68415.m03905 glycosyl transferase family 48 protein
            contains Pfam profile: PF02364 1,3-beta-glucan synthase;
            contains non-consensus splice aite AC at exon 33
          Length = 1959

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +3

Query: 471  FNNYQTNREGFAKLFRKLSDDSWEKTIGLIKHVTKRG 581
            +N +  NR G      K  +  WEK IG ++H  KRG
Sbjct: 1729 WNKWIYNRGGIGVPPEKSWESWWEKEIGHLRHSGKRG 1765


>At2g06200.1 68415.m00682 expressed protein
          Length = 244

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 583 PPLLVTCFMRPMVFSHESSDNFLKSFANPSL 491
           PP L+    RP +FS  SS +   SF +P+L
Sbjct: 32  PPHLLFLIKRPFLFSSSSSSSSSSSFFSPTL 62


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,424,213
Number of Sequences: 28952
Number of extensions: 307294
Number of successful extensions: 789
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1726528800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)