Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_F05
         (754 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0943 - 24662147-24662195,24662440-24662834,24662979-246630...    40   0.002
06_03_0253 + 18753901-18754278,18754873-18754968,18755167-187553...    33   0.24 
10_01_0295 - 3060398-3060415,3060487-3061011                           29   4.0  

>12_02_0943 -
           24662147-24662195,24662440-24662834,24662979-24663057,
           24663129-24663250,24663363-24663449,24663543-24663891,
           24664227-24664540
          Length = 464

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 18/47 (38%), Positives = 27/47 (57%)
 Frame = +2

Query: 143 CRECFLANVTHKFRSSIGKNKILGKADNVLICLSGKEGSTVLLDLIN 283
           C ECF AN+  KF+ ++  N ++   D+VL+  SG   S V L  I+
Sbjct: 66  CGECFRANLLGKFKLAVTSNAMVRPTDSVLLAFSGGPASRVALQFIH 112


>06_03_0253 +
           18753901-18754278,18754873-18754968,18755167-18755376,
           18756028-18756093,18756379-18756576,18756616-18756810,
           18756968-18757014,18757147-18757234,18757331-18757681,
           18758593-18759123
          Length = 719

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
 Frame = +2

Query: 305 HKKLRIT-PIFLHLCENYETIKNVIEQCQKYNYDLY-SPHISEYVQSKSHIPIVNSLPIV 478
           H+++  T    L LC+N E  K++++ CQ  N +L     IS +   K H+ I+    ++
Sbjct: 235 HQRISYTRDQLLQLCQNVEVPKDILKFCQDINVELNGEDKISGFGAEKDHVSILPFSYVI 294

Query: 479 NNELI 493
             E++
Sbjct: 295 MAEIV 299


>10_01_0295 - 3060398-3060415,3060487-3061011
          Length = 180

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +2

Query: 440 KSHIPIVNSLPIVNNELIEEYNNMQNSMLPTVKDDFITNIKRT 568
           +S +   N +PI  ++L  E  +    M+ +VKD F+ + K T
Sbjct: 36  ESEVNETNIIPITLDKLTSEQRHELEQMMSSVKDKFMNSFKET 78


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,069,568
Number of Sequences: 37544
Number of extensions: 290358
Number of successful extensions: 648
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)