Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_F05
         (754 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32547| Best HMM Match : Epimerase (HMM E-Value=3.2e-08)             31   1.0  
SB_9195| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.3  
SB_1968| Best HMM Match : PQQ (HMM E-Value=0.58)                       29   4.1  
SB_31955| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.4  
SB_9248| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.4  

>SB_32547| Best HMM Match : Epimerase (HMM E-Value=3.2e-08)
          Length = 327

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +2

Query: 350 NYETIKNVIEQCQKYNYDLYSP 415
           N E   N+IE C+KYN  L+SP
Sbjct: 121 NIEGFHNIIETCRKYNLRLFSP 142


>SB_9195| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 203

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 380 QCQKYNYDLYSPHISEYVQSKSHIPIVNSLPIVNNELIE 496
           QC    Y+L++P  ++ VQ +SH   V  +   NN + E
Sbjct: 152 QCNAMKYNLFTPPYTDLVQYRSHRDTVREIRSRNNNVRE 190


>SB_1968| Best HMM Match : PQQ (HMM E-Value=0.58)
          Length = 529

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = +2

Query: 191 IGKNKILGKADNVLICLS--GKEGSTVLLDLINNALSLDNHK 310
           IGKN I+G  DN L+C S  GK+  TV L      ++L ++K
Sbjct: 234 IGKNIIVGCMDNTLVCYSTKGKKLWTVYLPANIATMALMDYK 275


>SB_31955| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 355

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/53 (22%), Positives = 32/53 (60%)
 Frame = -2

Query: 612 KIYLQFKSFAYLIYKVLLILVMKSSLTVGNMLFCMLLYSSISSLFTIGKEFTI 454
           ++ ++ +S A ++ +  ++L++  S  +GN++ C  +Y+S  +L T+   + I
Sbjct: 8   RMEMEARSTALVVIETSILLLITVSTLLGNLMVCWAVYNS-KTLRTVANIYII 59


>SB_9248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 357

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 14/52 (26%), Positives = 30/52 (57%)
 Frame = +2

Query: 296 LDNHKKLRITPIFLHLCENYETIKNVIEQCQKYNYDLYSPHISEYVQSKSHI 451
           +D+  KL ITP  +   +  ET++N ++  ++Y     S  ++++VQ + H+
Sbjct: 128 MDDLDKL-ITPEDIQDFDKSETVRNAVKTLERYAKKPESLGLTDFVQVRDHL 178


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,843,248
Number of Sequences: 59808
Number of extensions: 382591
Number of successful extensions: 773
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)