Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_F05
(754 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z73974-1|CAA98270.2| 349|Caenorhabditis elegans Hypothetical pr... 63 2e-10
Z66519-5|CAA91382.2| 500|Caenorhabditis elegans Hypothetical pr... 31 0.88
U56961-6|AAK39299.1| 497|Caenorhabditis elegans Hypothetical pr... 31 1.2
AF067616-4|AAC19193.1| 373|Caenorhabditis elegans Hypothetical ... 30 2.0
AL021472-6|CAK55193.1| 290|Caenorhabditis elegans Hypothetical ... 29 4.7
Z72508-1|CAA96641.1| 342|Caenorhabditis elegans Hypothetical pr... 28 8.2
AY714779-1|AAU14146.1| 1338|Caenorhabditis elegans UNC-89 protein. 28 8.2
AF036706-18|AAK39278.1| 448|Caenorhabditis elegans Enhanced rna... 28 8.2
AF036706-17|AAK39277.2| 582|Caenorhabditis elegans Enhanced rna... 28 8.2
AF003131-8|AAP68959.1| 1393|Caenorhabditis elegans Uncoordinated... 28 8.2
AF003131-7|AAV34798.1| 1396|Caenorhabditis elegans Uncoordinated... 28 8.2
AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated... 28 8.2
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 28 8.2
>Z73974-1|CAA98270.2| 349|Caenorhabditis elegans Hypothetical
protein F29F11.3 protein.
Length = 349
Score = 63.3 bits (147), Expect = 2e-10
Identities = 59/220 (26%), Positives = 95/220 (43%), Gaps = 11/220 (5%)
Frame = +2
Query: 128 KKDLYCRECFLANVTHKFRSSIGKNKILGKAD--NVLICLSGKEGSTVLLDLINNALSLD 301
KK YC+ECF+ V +KFRSS+ K KI AD + LI G T LL IN+AL
Sbjct: 30 KKAWYCQECFVQMVRNKFRSSLSKKKIYKDADARDTLIVFDGTLSGTFLLHQINDALKQI 89
Query: 302 NHKKLRITP---IFLHLCENYETIKNVIEQCQKYNYDLYSPHISEYVQSKSHIPIVNSLP 472
+K+L + P + + L E+ E I+ VI++ Q+ + ++ V +
Sbjct: 90 TYKRLMVKPTVLVLVSLTEDTE-IQMVIKRIQEIKKSVLE-NVRWVVAHLACSMYDEDFK 147
Query: 473 IVNNEL-----IEEYNNM-QNSMLPTVKDDFITNIKRTLYIRYAKLLNCKYIFXXXXXXX 634
+ NE I +YN + + +PT + + +K + A +
Sbjct: 148 LKENECNGVEKISDYNQLIASCSVPTYRKELERVLKEKCLQKIACSMGILKCMVPDHADD 207
Query: 635 XXXXXXXXXAIGRGSQVQSDVGFLDSRDMEIXIIRPMKDI 754
+GRG + + V D R + +IRP+ DI
Sbjct: 208 LGRLAIDQLCLGRGGSISTLVTVTDKRP-DFMLIRPLCDI 246
>Z66519-5|CAA91382.2| 500|Caenorhabditis elegans Hypothetical
protein B0334.5 protein.
Length = 500
Score = 31.1 bits (67), Expect = 0.88
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Frame = +2
Query: 272 DLINNA--LSLDNHKKLRITPIFLH--LCENYETIKNVIEQCQKYNYDLYSPHI 421
DL+N + L +D + + P + L T +I+ +K NYD+YSPH+
Sbjct: 427 DLVNESKRLLIDARSPIEMVPKAVRPALAATGATTDYIIKTIEKNNYDIYSPHL 480
>U56961-6|AAK39299.1| 497|Caenorhabditis elegans Hypothetical
protein T19D7.1 protein.
Length = 497
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = -3
Query: 458 QLVYEIWIEHILIYVVNIGHNCTFDIVLLHSLLFRSFHTSVE 333
++ Y IWI I I +V + +CT D ++ LL R+ H+S E
Sbjct: 68 KMKYRIWILLIFIPIVVLCDDCTSDEDVIADLLGRNSHSSGE 109
>AF067616-4|AAC19193.1| 373|Caenorhabditis elegans Hypothetical
protein F29C4.6 protein.
Length = 373
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +2
Query: 143 CRECFLANVTHKFRSSIGKNKILGKADNVLICLSGKEGSTVL 268
C CF N +I NK+ + + V I SG + STVL
Sbjct: 32 CGPCFSRNFEDDVHEAIVNNKLFKRGERVAIGASGGKDSTVL 73
>AL021472-6|CAK55193.1| 290|Caenorhabditis elegans Hypothetical
protein Y17D7B.8 protein.
Length = 290
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +2
Query: 371 VIEQCQKYNYDLYSPHISEYVQSKSHIPI-VNSLPIVNNELIEEYNNMQNSMLPTVKDDF 547
++E+C+ Y+Y S QSKS++ I ++ I NN + + N++ S D
Sbjct: 68 MLEKCRFYSYATNGQSFSILAQSKSYVAIKTDASNIPNNTCPDTFTNIKFSYTSPATGDT 127
Query: 548 ITNIKRTLYIRY 583
+ K + + Y
Sbjct: 128 YSFKKNSTGLSY 139
>Z72508-1|CAA96641.1| 342|Caenorhabditis elegans Hypothetical
protein F28H7.1 protein.
Length = 342
Score = 27.9 bits (59), Expect = 8.2
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = -1
Query: 523 HAILHVIVLFYKFIVYNR*RIHNWYMRFGL 434
+A+LH L+ F+++N + W+M +GL
Sbjct: 103 YAVLHSHFLYRFFVLFNNQFLTRWFMPYGL 132
>AY714779-1|AAU14146.1| 1338|Caenorhabditis elegans UNC-89 protein.
Length = 1338
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 12 YYWVFFRFIF*ESKTKPKLTLAT*NVKNAIHLLH 113
Y VF RF+F + T+ ++ L V +A+H LH
Sbjct: 1208 YEDVFSRFVFNDYYTEEQVALTMRQVTSALHFLH 1241
>AF036706-18|AAK39278.1| 448|Caenorhabditis elegans Enhanced rnai
(rna interference)protein 1, isoform a protein.
Length = 448
Score = 27.9 bits (59), Expect = 8.2
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +2
Query: 149 ECFLANVT--HKFRSSIGKNKILGKADNVLICLSGKEGSTVLLDLINNALSLDNHKKL 316
+C L+N+ H FRS I K + N LI +GK G +L+ ++ + + H L
Sbjct: 263 QCLLSNIRMPHMFRSFINIKKTFKEKFNGLIKGNGKSGIENMLERLDLSFVGNKHSGL 320
>AF036706-17|AAK39277.2| 582|Caenorhabditis elegans Enhanced rnai
(rna interference)protein 1, isoform b protein.
Length = 582
Score = 27.9 bits (59), Expect = 8.2
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +2
Query: 149 ECFLANVT--HKFRSSIGKNKILGKADNVLICLSGKEGSTVLLDLINNALSLDNHKKL 316
+C L+N+ H FRS I K + N LI +GK G +L+ ++ + + H L
Sbjct: 263 QCLLSNIRMPHMFRSFINIKKTFKEKFNGLIKGNGKSGIENMLERLDLSFVGNKHSGL 320
>AF003131-8|AAP68959.1| 1393|Caenorhabditis elegans Uncoordinated
protein 89, isoform c protein.
Length = 1393
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 12 YYWVFFRFIF*ESKTKPKLTLAT*NVKNAIHLLH 113
Y VF RF+F + T+ ++ L V +A+H LH
Sbjct: 1172 YEDVFSRFVFNDYYTEEQVALTMRQVTSALHFLH 1205
>AF003131-7|AAV34798.1| 1396|Caenorhabditis elegans Uncoordinated
protein 89, isoform d protein.
Length = 1396
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 12 YYWVFFRFIF*ESKTKPKLTLAT*NVKNAIHLLH 113
Y VF RF+F + T+ ++ L V +A+H LH
Sbjct: 1175 YEDVFSRFVFNDYYTEEQVALTMRQVTSALHFLH 1208
>AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated
protein 89, isoform f protein.
Length = 7441
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 12 YYWVFFRFIF*ESKTKPKLTLAT*NVKNAIHLLH 113
Y VF RF+F + T+ ++ L V +A+H LH
Sbjct: 7220 YEDVFSRFVFNDYYTEEQVALTMRQVTSALHFLH 7253
>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
protein 89, isoform b protein.
Length = 8081
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 12 YYWVFFRFIF*ESKTKPKLTLAT*NVKNAIHLLH 113
Y VF RF+F + T+ ++ L V +A+H LH
Sbjct: 7860 YEDVFSRFVFNDYYTEEQVALTMRQVTSALHFLH 7893
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,451,702
Number of Sequences: 27780
Number of extensions: 313403
Number of successful extensions: 865
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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