Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_F05
         (754 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g35910.1 68417.m05103 expressed protein                             41   0.001
At2g44270.1 68415.m05509 expressed protein  contains Pfam profil...    31   0.82 
At5g05570.1 68418.m00605 transducin family protein / WD-40 repea...    30   1.4  
At1g34420.1 68414.m04275 leucine-rich repeat family protein / pr...    29   4.4  
At5g45200.1 68418.m05548 disease resistance protein (TIR-NBS-LRR...    28   7.7  

>At4g35910.1 68417.m05103 expressed protein
          Length = 458

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 17/48 (35%), Positives = 28/48 (58%)
 Frame = +2

Query: 140 YCRECFLANVTHKFRSSIGKNKILGKADNVLICLSGKEGSTVLLDLIN 283
           +C +CF  NV  KFR ++  + ++  +DNVL+  SG   S V L  ++
Sbjct: 59  FCADCFRNNVFGKFRLAVTSHAMITPSDNVLVAFSGGSSSRVSLQFVH 106


>At2g44270.1 68415.m05509 expressed protein  contains Pfam profile
           PF01171: PP-loop family
          Length = 358

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +2

Query: 116 IILRKKDLY--CRECFLANVTHKFRSSIGKNKILGKADNVLICLSGKEGSTVL 268
           ++ R K L   CRECF      +    I +N++    + V I  SG + STVL
Sbjct: 23  VLKRPKTLQQICRECFYEVFEEEIHQVIVQNRLFKSGERVAIGASGGKDSTVL 75


>At5g05570.1 68418.m00605 transducin family protein / WD-40 repeat
           family protein similar to unknown protein (pir||T04661);
           contains Pfam PF00400: WD domain, G-beta repeat (4
           copies, 2 weak)|8683726|gb|AV524198.1|AV524198
          Length = 1124

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 4/101 (3%)
 Frame = +2

Query: 209 LGKADNVLICLSGKEGSTVLLDLINNALSLDNHKKLR-ITPIFLHLCEN-YETIKNVIEQ 382
           +   D++L+C   K+G T+LLD     +     + L+  T I +H+ EN YE  +   E+
Sbjct: 696 INSEDDLLLCAMTKDGQTILLDGNTGKILASCLRPLKNPTAICMHIIENCYENYETPSEK 755

Query: 383 CQK--YNYDLYSPHISEYVQSKSHIPIVNSLPIVNNELIEE 499
             +     D +         S+SH P      +   +LI++
Sbjct: 756 PAENPSGKDKHENKSHIIKASESHSPDGEQNAVTETKLIDQ 796


>At1g34420.1 68414.m04275 leucine-rich repeat family protein /
           protein kinase family protein contains leucine rich
           repeat (LRR) domains, Pfam:PF00560; contains protein
           kinase domain, Pfam:PF00069
          Length = 966

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
 Frame = +2

Query: 437 SKSHIPIVNS--LPIVNNELIEEYNNMQNSMLPTVKDDFITNIKRTLYIRYAKLLNCKY 607
           S S+  + NS  LP+V N    E  ++ N+ L ++ + F+TN +R + +++      K+
Sbjct: 88  SLSNFDLSNSSFLPLVCNLQTLESLDVSNNRLSSIPEGFVTNCERLIALKHLNFSTNKF 146


>At5g45200.1 68418.m05548 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1261

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = -3

Query: 278 SNLIKP-LSLPSPTNRSKHYLPFL-IFYFFRC*NGIYELHLLGST 150
           SN I+  L +P    + +H + FL I YFFR  N  Y   LLGS+
Sbjct: 444 SNTIQDVLRIPYDELKEQHKIVFLDIAYFFRFENESYVRRLLGSS 488


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,116,586
Number of Sequences: 28952
Number of extensions: 272048
Number of successful extensions: 678
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)